prot_H-elongata_contig80768.15732.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80768.15732.1
Unique Nameprot_H-elongata_contig80768.15732.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-10
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 0
Query:    1 MMLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMKL 53
            M+LAIAAE+D+E+  +DV+T+F  AD++EDVFVK+ PG+E  N  G +LVMKL
Sbjct:  356 MVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKL 408          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    1 MMLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMKL 53
            M+ AIAAE D ++  +DV+TAF  AD++E+VFV++ PGYE  N   ++LVMKL
Sbjct:  395 MVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKL 447          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 4.550e-8
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMKLF 54
            +LA+AA+LD EI  MDV++AF N D+DE++++K+PPG+ R N    +L   L+
Sbjct:  963 LLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALY 1015          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 57.0 bits (136), Expect = 4.560e-8
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMKLF 54
            +LA+AA+LD EI  MDV++AF N D+DE++++K+PPG+ R N    +L   L+
Sbjct: 1022 LLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALY 1074          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A2I0L9T9_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0L9T9_PUNGR)

HSP 1 Score: 52.4 bits (124), Expect = 9.990e-7
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 MMLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRL 49
            MMLAIAA  DYEI+ M+V+TAF N+ ++ED+F+  P G+E  +K+ + L
Sbjct:  123 MMLAIAAHYDYEIWQMNVKTAFLNSYIEEDIFMDQPKGFESKDKSKIWL 171          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR)

HSP 1 Score: 53.1 bits (126), Expect = 1.030e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGV 47
            MLAIAA  DYE++ MDV+TAF N  ++ED+F+  P G+E  +K+ V
Sbjct:  172 MLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKV 217          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A1U8Q9U1_NELNU (uncharacterized protein LOC109115353 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q9U1_NELNU)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMK 52
            +L++AA LD+E+  MDV  AF N  +DE+V++K+PPG+E   K G  +V +
Sbjct:  487 LLSMAANLDWELHQMDVSNAFLNGTLDEEVYMKLPPGFEDKEKPGSDIVQR 537          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A1Y6M2Q9_ZYMTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zymoseptoria tritici ST99CH_1A5 TaxID=1276529 RepID=A0A1Y6M2Q9_ZYMTR)

HSP 1 Score: 50.8 bits (120), Expect = 1.220e-6
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINK 44
            M A+AA+ ++ I  MDV+TAF   D+D D+FV++PPGYE+  K
Sbjct:    1 MFALAAKNNWHIHQMDVKTAFLYGDIDADIFVELPPGYEQTGK 43          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLVMKLF 54
            +LA+ A+LD EI  MDV++AF N D+DE++++ IPP + + NK   RL   L+
Sbjct:  974 LLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALY 1026          
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Match: A0A2I0JTS5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JTS5_PUNGR)

HSP 1 Score: 52.4 bits (124), Expect = 1.930e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    2 MLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGV 47
            MLAIAA  DYE++ MDV+TAF N  ++ED+F+  P G+E  +K+ V
Sbjct:  160 MLAIAAHYDYEVWQMDVKTAFLNGHIEEDIFMDQPRGFESKDKSKV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80768.15732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE1.630e-1058.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE1.770e-852.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H317_9APHY4.550e-847.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY4.560e-847.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0L9T9_PUNGR9.990e-751.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0IJP3_PUNGR1.030e-652.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8Q9U1_NELNU1.040e-645.10uncharacterized protein LOC109115353 n=1 Tax=Nelum... [more]
A0A1Y6M2Q9_ZYMTR1.220e-651.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GM49_9APHY1.430e-645.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0JTS5_PUNGR1.930e-652.17Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..43
e-value: 3.8E-11
score: 43.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80768contigH-elongata_contig80768:1134..1298 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80768.15732.1mRNA_H-elongata_contig80768.15732.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80768 978..2113 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80768.15732.1 ID=prot_H-elongata_contig80768.15732.1|Name=mRNA_H-elongata_contig80768.15732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MMLAIAAELDYEIFMMDVQTAFFNADVDEDVFVKIPPGYERINKAGVRLV
MKLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2