prot_H-elongata_contig80728.15723.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig80728.15723.1
Unique Name	prot_H-elongata_contig80728.15723.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	131

Homology

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BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Match: A0A6H5JLW9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.730e-36
Identity = 72/130 (55.38%), Postives = 94/130 (72.31%), Query Frame = 0

Query:    1 MKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRIQTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWGVVLFSIGTVLAILLRAGEPLFVCAALGLSR 130
            +K+ +L    +V+AGGGA G SPGRERL  AG      + VV +LL++RIQ ADFGDA DVE ET S LG+ + K+AS  R+SA+EHDLACL+S A  WGV LF IG VL++L +AG+PLF+ + + LSR
Sbjct:   79 LKIAMLGYARSVIAGGGATGASPGRERLLAAGFGAAVLSGVVCRLLEQRIQNADFGDAPDVEMETLSPLGLALGKKASARRVSAREHDLACLRSTAG-WGVALFVIGAVLSLLFKAGDPLFILSTVALSR 207

[Close]

BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Match: D7G1C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.350e-34
Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 0

Query:    1 MKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRIQTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWGVVLFSIGTVLAILLRAGEPLFVCAALGLSR 130
            +K+ +L    +V+AGGGA G SPGRERL  AG+     + VV +LL++RIQ ADFGDA DVE ET S LG+++ K+AS  R+SA+EHDLACL+S A RWGV LF IG VL++  +AG+PLF+ + + LSR
Sbjct:  421 LKIAMLGYARSVIAGGGATGASPGRERLLAAGVGAAVLSGVVCRLLEQRIQNADFGDAPDVEMETLSPLGLVLGKKASTQRVSAREHDLACLRSTA-RWGVALFVIGAVLSLFFKAGDPLFILSTVALSR 549

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot

BLAST of mRNA_H-elongata_contig80728.15723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JLW9_9PHAE	2.730e-36	55.38	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7G1C8_ECTSI	1.350e-34	55.38	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 28..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 101..128
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..10
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 47..100
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 11..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 129..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig80728	contig	H-elongata_contig80728:765..2325 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig80728.15723.1	mRNA_H-elongata_contig80728.15723.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig80728 753..2325 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig80728.15723.1 ID=prot_H-elongata_contig80728.15723.1|Name=mRNA_H-elongata_contig80728.15723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MKVLLLQATTNVVAGGGAAGTSPGRERLSLAGMAIGGGTVVVHKLLQRRI
QTADFGDAADVETETRSLLGVLMRKRASIGRISAKEHDLACLQSAASRWG
VVLFSIGTVLAILLRAGEPLFVCAALGLSR*