prot_H-elongata_contig80373.15689.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80373.15689.1
Unique Nameprot_H-elongata_contig80373.15689.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYRKLPDI S+D G+VGH TRAAINTPIQGGAADVAMVAMI +VRSPLLK++GWKLLLQ
Sbjct: 1360 RYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQ 1418          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.610e-23
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYRKLPDI S+D G+VGH TRAAINTPIQGGAADVAMVAMI +VRSPLLK++GWKLLLQ
Sbjct: 1489 RYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQ 1547          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2BNW5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNW5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.800e-21
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYRKLP+I S D G+ GHS RAAINTPIQGGAADV MVAM+K+  SPLLK++G+KLLLQ
Sbjct:   87 RYRKLPEINSRDRGKQGHSARAAINTPIQGGAADVVMVAMVKINESPLLKKLGYKLLLQ 145          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S3H904_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H904_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYRKL + K      VGH+ RAAINTPIQG AAD+ M+AMIKL +SP+LKE+ WKLLLQ
Sbjct:   16 RYRKLSEAKGPQGPAVGHALRAAINTPIQGSAADIVMMAMIKLWKSPVLKELNWKLLLQ 74          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2RYY7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYY7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.970e-16
Identity = 38/59 (64.41%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYR LP+  S +    GH+ RA+INTPIQGGAADVAM+AMIK+ +SPLLK++GW LL+Q
Sbjct:   87 RYRHLPEAGSKNRKLAGHAERASINTPIQGGAADVAMMAMIKINKSPLLKKLGWILLMQ 145          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A4Q3P529_9BACT (POLAc domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q3P529_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-15
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYRKLP  +       GH+ RAAINTPIQG AAD+ M+AM++L RSPLLKE GW+LLLQ
Sbjct:  285 RYRKLPQARGDSGLEQGHALRAAINTPIQGSAADIVMMAMLRLWRSPLLKERGWRLLLQ 343          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S1YXE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YXE2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.840e-15
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 RYRKLPD-IKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYR+LPD +   +W  VG + RA+INTPIQGGAADVAM+AMIK+  SP+LK++GW LLLQ
Sbjct:  611 RYRQLPDAMDKKNWRNVGRAERASINTPIQGGAADVAMMAMIKINDSPILKKLGWILLLQ 670          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S1D2I8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2I8_CYCTE)

HSP 1 Score: 73.6 bits (179), Expect = 2.950e-15
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYR LP  K+ D   +GHS RA+INTPIQGGAADVAM+AM+K+  +  LK +GW LL+Q
Sbjct:    6 RYRDLPGAKAKDRKLLGHSERASINTPIQGGAADVAMMAMVKINNNEKLKRLGWILLMQ 64          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2USC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USC7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.360e-15
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            RYR+LP   S   G VGH+ RA+INTPIQGGAADVAM+AMIK+  S  LK +GW LL+Q
Sbjct:  153 RYRQLPGAMSDQRGLVGHAERASINTPIQGGAADVAMMAMIKINNSETLKNLGWVLLMQ 211          
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Match: A0A7S2SQ26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ26_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.580e-15
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLKEMGWKLLLQ 59
            R R+LPDI +   G  GH  RAAINTPIQG AADV M+AM+KL +SP L+E+G+KLLLQ
Sbjct:   53 RERRLPDITAKSRGARGHMERAAINTPIQGSAADVVMMAMLKLNQSPRLEELGYKLLLQ 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80373.15689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ5_ECTSI1.600e-2384.75Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9D2_9PHAE1.610e-2384.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BNW5_9STRA9.800e-2174.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3H904_9STRA1.420e-1766.10Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RYY7_9STRA3.970e-1664.41Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4Q3P529_9BACT1.490e-1564.41POLAc domain-containing protein n=1 Tax=Cytophagac... [more]
A0A7S1YXE2_9STRA2.840e-1565.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1D2I8_CYCTE2.950e-1561.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2USC7_9STRA4.360e-1564.41Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SQ26_9STRA4.580e-1564.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.370coord: 33..59
e-value: 1.6E-10
score: 42.6
NoneNo IPR availableGENE3D1.10.150.20coord: 1..32
e-value: 1.6E-10
score: 42.6
NoneNo IPR availablePANTHERPTHR10133:SF55coord: 1..60
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..59
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 1..59
e-value: 5.9E-10
score: 38.7
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 1..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80373contigH-elongata_contig80373:1274..1480 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80373.15689.1mRNA_H-elongata_contig80373.15689.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80373 1274..1480 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80373.15689.1 ID=prot_H-elongata_contig80373.15689.1|Name=mRNA_H-elongata_contig80373.15689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
RYRKLPDIKSSDWGRVGHSTRAAINTPIQGGAADVAMVAMIKLVRSPLLK
EMGWKLLLQARFLFEMAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR002298DNA_polymerase_A