prot_H-elongata_contig8030.15682.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8030.15682.1
Unique Nameprot_H-elongata_contig8030.15682.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: D8LC67_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC67_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.810e-40
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 0
Query:   25 SATAEGLMALAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLAYRRMTS 106
            S  A GL ALAAELTCP+CLC+FEDAH LPCSHRFCLECI GCF+S+K+QECPLCK+PAWKRDL RDV ++NI+ AYRRM +
Sbjct:   58 SEAAGGLNALAAELTCPICLCVFEDAHSLPCSHRFCLECILGCFKSSKRQECPLCKIPAWKRDLTRDVSIQNIIAAYRRMAA 139          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A6H5KLF7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.160e-37
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 0
Query:   25 SATAEGLMALAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLAYRRMTS 106
            S  A GL ALAAELTCP+CLC+FEDAH LPCSHRFCLECI GCF+S+K+QECPLCK+PAWKRDL RDV ++NI+ AYRRM +
Sbjct:  380 SEAAGGLNALAAELTCPICLCVFEDAHSLPCSHRFCLECILGCFKSSKRQECPLCKIPAWKRDLTRDVSIQNIIAAYRRMAA 461          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A8J5XEH0_DIALT (RING-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XEH0_DIALT)

HSP 1 Score: 79.0 bits (193), Expect = 6.780e-15
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   10 GAKAEGEQGGGGKETSATAEGL--MALAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNIL 98
            GA    E GGG +   A A GL    L AEL C +CL  F+D H LPC H FCL CI     +T+  +CPLC+ PAW+R L+++  L NI+
Sbjct:  463 GAACAAEPGGGARALPA-ANGLPLACLEAELCCQICLATFDDPHSLPCQHTFCLSCIISHMVATRVNDCPLCRQPAWRRQLRKNHKLANIV 552          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: UPI0007BA9366 (LOW QUALITY PROTEIN: zinc-binding protein A33-like n=1 Tax=Poecilia formosa TaxID=48698 RepID=UPI0007BA9366)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-10
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0
Query:   37 ELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLAYRR 103
            +L CPVCL +F++  +L CSH FC EC+  C+R    +ECP+CK  + K D   ++ L+N+ L   R
Sbjct:    8 DLCCPVCLEIFKNPVILSCSHSFCKECLEKCWREKPVRECPVCKRRSSKADPLCNLALKNLCLLQER 74          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A3Q3EGQ7_9LABR (Zinc-binding protein A33-like n=3 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3EGQ7_9LABR)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-10
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   34 LAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCK 80
            L  +LTCPVCLC+F D  +LPCSH FC EC+ G  +  KK  CPLCK
Sbjct:   16 LQKDLTCPVCLCIFRDPVLLPCSHSFCRECLQGALKRNKK--CPLCK 60          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A8D2JAN2_VARKO (RING-type domain-containing protein n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2JAN2_VARKO)

HSP 1 Score: 62.4 bits (150), Expect = 2.680e-10
Identity = 27/66 (40.91%), Postives = 39/66 (59.09%), Query Frame = 0
Query:   34 LAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCF--RSTKKQECPLCKVPAWKRDLKRDVPLRNI 97
            +A +L CP+CL +F+D H+L CSH FC  C+  CF  +   K  CP C+ P   +D  R+  L N+
Sbjct:   10 IAEDLLCPICLSIFQDPHMLACSHNFCFSCLESCFTAKGQHKGLCPECRAPFDLQDAVRNRVLSNL 75          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A4W3GZY8_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GZY8_CALMI)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-9
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 0
Query:   34 LAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNI 97
            LA +LTCPVCL LF D   L C H FC  CI GC+   +   CP C+     R+L+   PL N+
Sbjct:   10 LAEDLTCPVCLDLFNDPVSLVCGHYFCRSCIAGCWERQEAHSCPECRRACPGRELRASRPLANL 73          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: A0A096M6X6_POEFO (Uncharacterized protein n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A096M6X6_POEFO)

HSP 1 Score: 62.8 bits (151), Expect = 2.180e-9
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0
Query:   37 ELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLAYRR 103
            +L CPVCL +F++  +L CSH FC EC+  C+R    +ECP+CK  + K D   ++ L+N+ L   R
Sbjct:   19 DLCCPVCLEIFKNPVILSCSHSFCKECLEKCWREKPVRECPVCKRRSSKADPLCNLALKNLCLLQER 85          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: UPI00148F6E95 (zinc-binding protein A33-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F6E95)

HSP 1 Score: 62.8 bits (151), Expect = 3.080e-9
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   34 LAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLAY 101
            + A+L+CPVC  +FE+  VLPC+H FC EC+ G +R    +ECP+CK  +   +    + LRN+  ++
Sbjct:    5 IEADLSCPVCHEIFEEPVVLPCTHSFCKECLQGWWREKHSRECPVCKAVSKTAEPPVSLVLRNLCESF 72          
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Match: UPI001C3FC9B5 (nuclear factor 7, brain-like n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FC9B5)

HSP 1 Score: 61.6 bits (148), Expect = 3.430e-9
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 0
Query:   34 LAAELTCPVCLCLFEDAHVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNI 97
            LA +LTCPVCL LF D   L C H FC  CI GC+   +   CP C+     R+L+   PL N+
Sbjct:   10 LAEDLTCPVCLDLFNDPVSLVCGHYFCRSCIAGCWERQETHSCPECRRACPGRELRASRPLANL 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8030.15682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC67_ECTSI1.810e-4075.61RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KLF7_9PHAE3.160e-3775.61RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J5XEH0_DIALT6.780e-1546.15RING-type domain-containing protein n=1 Tax=Diacro... [more]
UPI0007BA93661.730e-1041.79LOW QUALITY PROTEIN: zinc-binding protein A33-like... [more]
A0A3Q3EGQ7_9LABR1.870e-1059.57Zinc-binding protein A33-like n=3 Tax=Labrus bergy... [more]
A0A8D2JAN2_VARKO2.680e-1040.91RING-type domain-containing protein n=1 Tax=Varanu... [more]
A0A4W3GZY8_CALMI2.110e-945.31Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A096M6X6_POEFO2.180e-941.79Uncharacterized protein n=1 Tax=Poecilia formosa T... [more]
UPI00148F6E953.080e-939.71zinc-binding protein A33-like n=1 Tax=Notolabrus c... [more]
UPI001C3FC9B53.430e-945.31nuclear factor 7, brain-like n=1 Tax=Callorhinchus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 40..79
e-value: 9.9E-6
score: 35.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 40..80
score: 12.342
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 19..106
e-value: 6.3E-20
score: 72.5
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 40..79
e-value: 3.5E-8
score: 33.2
IPR011364Breast cancer type 1 susceptibility protein (BRCA1)PANTHERPTHR13763:SF0BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEINcoord: 30..104
IPR031099BRCA1-associatedPANTHERPTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1coord: 30..104
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 55..64
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 36..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8030contigH-elongata_contig8030:6089..7917 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8030.15682.1mRNA_H-elongata_contig8030.15682.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8030 5418..8684 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8030.15682.1 ID=prot_H-elongata_contig8030.15682.1|Name=mRNA_H-elongata_contig8030.15682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MVNQDISSEGAKAEGEQGGGGKETSATAEGLMALAAELTCPVCLCLFEDA
HVLPCSHRFCLECINGCFRSTKKQECPLCKVPAWKRDLKRDVPLRNILLA
YRRMTS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR011364BRCA1
IPR031099BRCA1-associated
IPR017907Znf_RING_CS