prot_H-elongata_contig80289.15681.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80289.15681.1
Unique Nameprot_H-elongata_contig80289.15681.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length269
Homology
BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: D7G8I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.980e-29
Identity = 94/204 (46.08%), Postives = 104/204 (50.98%), Query Frame = 0
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRL-------------ERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSD-------EAKTSTKMAT-----IAEVPHRGGRVDAARAGPAMPAWTTRKEFDGA 179
            PLL GLELT+AQ+ T +RV AAI+ADF LRRLMLLRRCDVTVRSFLR      S   E                  G    G G +               E+ A   P  +TKR +L D+P  ITVDDAL AP +VA QH  K  E  D       E  T TK A      IAEV  RGGRV  AR GP    W TRKEFD A
Sbjct:  116 PLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERK--------------HGGESAGGKGGQXXXXXXXXXXXXXDEEKFADLPPALRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTKKAVLPTADIAEVSDRGGRVSDARGGP---VWKTRKEFDKA 302          
BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: UPI000C76EABE (protein FAM98B-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76EABE)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-7
Identity = 63/193 (32.64%), Postives = 87/193 (45.08%), Query Frame = 0
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFL--RQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEAKTSTKM--ATIAEVPHRGGRVDAARAGPA-MPAWTTRKEFDGARGRGGGRSG 188
            P+  G +LTS Q      +Q  +SAD++LRR MLL R D TV+SF    + Q ++ E A +  +L                                      R  L+D+P R+ + D LAA  + A   + K+  S+  A T T +    I EVP RGGR D   A P  MP W+ R+     +GRGGGR G
Sbjct:  188 PIFIG-DLTSTQWNQLEEIQTHLSADYSLRRRMLLTRLDATVQSFSWSEKVQQREGEIAVLYNKL--------------------------------------RSVLQDKP-RVGIPDLLAAREDAAI--MEKVCSSNSRAHTQTSLNKVMIGEVPDRGGRTDTMTAPPPEMPGWSQRQPD---QGRGGGRGG 335          
BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Match: A0A4D9CVS5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVS5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.920e-5
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 0
Query:    1 PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQGKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQTKRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEA--KTSTKMATIAEVPHRGGRVDAAR 162
            P  + ++LT +QR     + A +  DF LRR M+L+R DV++RSFL                        +++   G++L+    +R+E        RQ  R+ + DE   I VD AL A + V +Q   KIT+       +++ K   I  VP RGGRVDA R
Sbjct:  270 PRKSEVQLTPSQRQMLEDIDAHLRNDFGLRRQMVLKRLDVSLRSFL----------------------WTERVAEGGSVLV----KRVEAA------RQGLREEVGDE---IGVDAALRAGKGVMYQQACKITQERGRGWGQSTVKRLVIGSVPDRGGRVDALR 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80289.15681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8I5_ECTSI6.980e-2946.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000C76EABE1.340e-732.64protein FAM98B-like n=1 Tax=Eurytemora affinis Tax... [more]
A0A4D9CVS5_9STRA6.920e-531.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018797FAM98PFAMPF10239DUF2465coord: 99..175
e-value: 2.0E-8
score: 33.9
coord: 1..70
e-value: 9.2E-9
score: 35.0
IPR018797FAM98PANTHERPTHR31353FAMILY NOT NAMEDcoord: 7..219
NoneNo IPR availablePANTHERPTHR31353:SF1coord: 7..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80289contigH-elongata_contig80289:391..1930 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80289.15681.1mRNA_H-elongata_contig80289.15681.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80289 391..1930 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80289.15681.1 ID=prot_H-elongata_contig80289.15681.1|Name=mRNA_H-elongata_contig80289.15681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
PLLAGLELTSAQRITTNRVQAAISADFTLRRLMLLRRCDVTVRSFLRQKQ
GKDSEAAEMPTELKKKQKQQQQMTFAGALLLGHGPRRLERVAHPSPLRQT
KRDSLKDEPDRITVDDALAAPRNVAWQHLRKITESSDEAKTSTKMATIAE
VPHRGGRVDAARAGPAMPAWTTRKEFDGARGRGGGRSGGRGRGGGQGGGR
GRGGGQGGGRWRGGGRKGGGGRGGQGGRGNHWGSGGGGRGGGEGNEGYMG
GGEHKRKWSGHGGRRQGY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018797FAM98