prot_H-elongata_contig79931.15641.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79931.15641.1
Unique Nameprot_H-elongata_contig79931.15641.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length271
Homology
[Close]
BLAST of mRNA_H-elongata_contig79931.15641.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.740e-11
Identity = 43/99 (43.43%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:    1 DTRQTEDIGGEWDGVDLASAPCLLSRAEADKNPSPYEEEATDCATLNTGTMGRRVLGNGGGPEEELIPARPVTPPASLVYKPCMRLRIAQDVPRELYIM 99
            D+R  ED G  WDGVDLAS+PCL      D        E  + A  N G    RV G    P    +P RP TPP  LVYKPC+ +++A +VP EL  M
Sbjct:  151 DSRHAEDTGS-WDGVDLASSPCLQQYMVGDNI------EDVESAAGNVGVQ-ERVYGR---PSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAM 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79931.15641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU5_ECTSI3.740e-1143.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79931contigH-elongata_contig79931:225..2533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79931.15641.1mRNA_H-elongata_contig79931.15641.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79931 225..2533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79931.15641.1 ID=prot_H-elongata_contig79931.15641.1|Name=mRNA_H-elongata_contig79931.15641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
DTRQTEDIGGEWDGVDLASAPCLLSRAEADKNPSPYEEEATDCATLNTGT
MGRRVLGNGGGPEEELIPARPVTPPASLVYKPCMRLRIAQDVPRELYIMP
GAPEPGSTRRVIQQSSQTDEANDGSGLASLQVGIPLKQMYPRRPNAACRT
EPRYFGKVSQKRSAEAPSDKPRFRHASLPEPTFRQTSYGKAWYMDPNLWG
MAGSSEFMNLIREEDDAEGAKQLLDYTEAIKGTIPTLFSATRFVTYIRQQ
GLRIPAYLESTDRAMRAEKPR
back to top