prot_H-elongata_contig79530.15607.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79530.15607.1
Unique Nameprot_H-elongata_contig79530.15607.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length249
Homology
BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 5.810e-57
Identity = 124/237 (52.32%), Postives = 147/237 (62.03%), Query Frame = 0
Query:   32 LEGIDACLRRWKAARREGQVVLAGLSNALLLRTYAEQ-------ERGASASHVWGALSSAGTAVPRVALAIEARARRLHEDLSALQDAMVAAAAGVRRHAQEARRQCYPEREAAPLDGCAAPASPMAAWKGGTKATSTSSVA----------------AVVGGGYAMEDVADAASEVSEMLLREALVTATVVHRVGE--CQDDRHALTMYAAAWMMQPYLDTGRGSDLEVMVGARRR 243
            L+ ID CLRRWKAAR EGQ VL  LSNALLLRTY ++        R A+   VWGAL+ AGT V RV++A E RARRLH DLSALQDAMVAAA  +RRHA+E RR+    R        +  +S   A                              A VGGGYA+ DVAD  S+V+EML++EALVTATVV  VG+   +DDR ALT+YAAAWMMQPY+D GR  +LEVMVG + R
Sbjct:   27 LDEIDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDKGXXXXXXXRAATDGAVWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGEDHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMVGGQGR 263          
BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: A0A835ZE08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE08_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.870e-7
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 0
Query:  171 GGYAMEDVADAASEVSEMLLREALVTATVVHRVGECQDDRHALTMYAAAWMMQPYLDTGRGSDL 234
            GGY+  D+A AA  +  ML RE  V   V    G+C   R  LT+YAAAWMMQPY++ G   DL
Sbjct:  116 GGYSAADIAQAALALGRMLEREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPYMERGLWKDL 178          
BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Match: A0A835ZCP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.340e-5
Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 0
Query:  171 GGYAMEDVADAASEVSEMLLREALVTATVVHRVGECQDDRHALTMYAAAWMMQPYLD--TGRGSDLEVMVG 239
            GGY+  D+A AA  +  ML RE  V   V    G+C   R  LT+YAAAWMMQP +   TG G   + + G
Sbjct:   95 GGYSAADIAQAALALGRMLKREVAVAEAVCADAGDCSS-RDTLTLYAAAWMMQPTISKRTGCGQYFDAISG 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79530.15607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI5.810e-5752.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZE08_9STRA1.870e-748.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCP9_9STRA3.340e-543.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79530contigH-elongata_contig79530:2139..2885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79530.15607.1mRNA_H-elongata_contig79530.15607.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79530 1523..2919 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79530.15607.1 ID=prot_H-elongata_contig79530.15607.1|Name=mRNA_H-elongata_contig79530.15607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MSSPPGAVDRTADDTGQTLEGDANNCGSGDILEGIDACLRRWKAARREGQ
VVLAGLSNALLLRTYAEQERGASASHVWGALSSAGTAVPRVALAIEARAR
RLHEDLSALQDAMVAAAAGVRRHAQEARRQCYPEREAAPLDGCAAPASPM
AAWKGGTKATSTSSVAAVVGGGYAMEDVADAASEVSEMLLREALVTATVV
HRVGECQDDRHALTMYAAAWMMQPYLDTGRGSDLEVMVGARRRKSTLP*
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