prot_H-elongata_contig79423.15599.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79423.15599.1
Unique Nameprot_H-elongata_contig79423.15599.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length65
Homology
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.510e-22
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD------IRVVDRLVHMCEGEEWVVIGTTYKA 63
            RFIVK KSFTQQFSHVYNKRLL L+ AVR+AAE RWG       ++ VDRLV+M EG+EWVVIGTTYKA
Sbjct:   49 RFIVKKKSFTQQFSHVYNKRLLALKGAVRQAAEKRWGKEGEGGGVKFVDRLVNMREGDEWVVIGTTYKA 117          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2UV96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV96_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 62
            RF+VK KSF QQFSH+Y KRLL ++  VR+    +WG  ++V+D++VH+ E + WVVIGT YK
Sbjct:   14 RFLVKEKSFNQQFSHIYTKRLLEMKEVVRKQCSQKWGPSVKVLDKVVHLQENQTWVVIGTLYK 76          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7S2RVE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVE5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.550e-8
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWG-DIRVVDRLVHMCEGEEWVVIGTTYK 62
            RF ++++ F+QQ+SH+YNKRLL +RP ++  A+ RWG D   +D+++++ E  +  V+GT  K
Sbjct:   48 RFTLQDRKFSQQYSHIYNKRLLQMRPLLQATAKERWGQDCSWMDQIINIPEESKVAVVGTLCK 110          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A8B8DZN5_CRAVI (DNA polymerase delta subunit 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZN5_CRAVI)

HSP 1 Score: 58.2 bits (139), Expect = 2.680e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 65
            RF++KNKSF++Q++H+Y +RL  +RP V  +A+ +WG   V  +L  +   E  VVIGT +K  E
Sbjct:   37 RFLLKNKSFSRQYAHLYAERLWEMRPQVVESAKEKWGKDTVFRKLHELKSDETCVVIGTLFKQME 101          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A5D6Y4J2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4J2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.660e-8
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 62
            RF++K KS+ QQFSHVY  RLL LR AV +   A  G   V+ +++ + +G+E V+IGT  K
Sbjct:   20 RFVLKQKSYNQQFSHVYVSRLLRLRAAVAQRVAADAGAPSVLPKIIDLRDGDECVIIGTALK 81          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A7L3M1L3_9CHAR (DNA polymerase delta subunit 2 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3M1L3_9CHAR)

HSP 1 Score: 56.6 bits (135), Expect = 9.360e-8
Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    2 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 65
            F+++ +SF++Q++HVY  RLL +RP + + A+ +WG   V+ +L  +  GE+  V+GT +KA +
Sbjct:   39 FLLRQRSFSRQYAHVYAARLLQMRPLLEKRAQHKWGKNVVLRKLCELRAGEKCCVVGTLFKAMQ 102          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: K1REV3_CRAGI (DNA polymerase delta subunit 2 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1REV3_CRAGI)

HSP 1 Score: 55.5 bits (132), Expect = 2.390e-7
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYKARE 65
            RF++K+K+F++Q++H+Y +RL  +RP V  +A  +WG   V+ +L  +   E  VVIGT +K  E
Sbjct:   37 RFLLKDKTFSRQYAHLYAERLWEVRPKVEASARKKWGKDIVIRKLHELKSDETCVVIGTLFKHME 101          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: M2X386_GALSU (DNA polymerase delta subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X386_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 3.270e-7
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    2 FIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGD-IRVVDRLVHMCEGEEWVVIGTTYK 62
            F++ +++++QQ+S +Y  RL  LRP V  AA  +W D I   DRL+H+ +G+  V+IG  YK
Sbjct:   25 FLLHSRNYSQQYSQIYFCRLAALRPVVENAARNKWTDGILFRDRLLHLQQGDNCVIIGVIYK 86          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A485KV49_9STRA (Aste57867_11961 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KV49_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-6
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 62
            RFI+K KS+ QQ++H+Y  RL  L P VR   EAR G + ++ +++ +  G+  V+IGT +K
Sbjct:   19 RFILKKKSYEQQYAHMYVSRLRALEPHVRAHVEARAG-VPILPKIIDLKPGDHCVIIGTIFK 79          
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Match: A0A3R6YY05_9STRA (DNA_pol_D_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YY05_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.360e-6
Identity = 23/62 (37.10%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    1 RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCEGEEWVVIGTTYK 62
            RF++K KSF QQ+SH+Y  RL  L P VR         + ++ +++ +  G++ VVIGT ++
Sbjct:   23 RFVLKKKSFDQQYSHMYVSRLRALEPQVRANIPQSSAHVPILPKIIDLSAGDQCVVIGTIFR 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79423.15599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI2.510e-2272.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UV96_9STRA3.980e-1653.97Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RVE5_9STRA2.550e-841.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8B8DZN5_CRAVI2.680e-843.08DNA polymerase delta subunit 2-like n=1 Tax=Crasso... [more]
A0A5D6Y4J2_9STRA3.660e-846.77Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7L3M1L3_9CHAR9.360e-837.50DNA polymerase delta subunit 2 (Fragment) n=2 Tax=... [more]
K1REV3_CRAGI2.390e-740.00DNA polymerase delta subunit 2 n=2 Tax=Crassostrea... [more]
M2X386_GALSU3.270e-741.94DNA polymerase delta subunit 2 n=1 Tax=Galdieria s... [more]
A0A485KV49_9STRA1.140e-641.94Aste57867_11961 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R6YY05_9STRA5.360e-637.10DNA_pol_D_N domain-containing protein n=1 Tax=Apha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.430coord: 18..65
e-value: 9.6E-7
score: 30.6
IPR040663DNA polymerase delta subunit, OB-fold domainPFAMPF18018DNA_pol_D_Ncoord: 12..63
e-value: 1.7E-10
score: 41.1
IPR024826DNA polymerase delta/II small subunit familyPANTHERPTHR10416DNA POLYMERASE DELTA SUBUNIT 2coord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79423contigH-elongata_contig79423:251..484 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79423.15599.1mRNA_H-elongata_contig79423.15599.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79423 251..484 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79423.15599.1 ID=prot_H-elongata_contig79423.15599.1|Name=mRNA_H-elongata_contig79423.15599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
RFIVKNKSFTQQFSHVYNKRLLGLRPAVRRAAEARWGDIRVVDRLVHMCE
GEEWVVIGTTYKARE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040663DNA_pol_D_N
IPR024826DNA_pol_delta/II_ssu