prot_H-elongata_contig79317.15592.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig79317.15592.1
Unique Name	prot_H-elongata_contig79317.15592.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	154

Homology

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JGJ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 4.040e-45
Identity = 78/155 (50.32%), Postives = 106/155 (68.39%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 154
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ ++TSTRA K   R+++D+ G+    +IGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P  V + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct:  133 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRNIGGIWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFT 287

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.180e-44
Identity = 76/155 (49.03%), Postives = 105/155 (67.74%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +D+N FH  + H+ E LLR+TA++LG+ L G +  C GCS++K   K I   T  R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R TW +F++ KSD  + F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  570 MDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 724

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.440e-44
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +D+N FH  + H+ + LLR+TA++LG  L G + EC GCS+AK + K I R T +R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R  W +F++ KSD    F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  664 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 818

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.490e-44
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +D+N FH  + H+ + LLR+TA++LG  L G + EC GCS+AK + K I R T +R+DK  GR+FVD+ G K VAS+GGK Y +++ DDF+R  W +F++ KSD    F  FLA  R  G PS+VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  371 MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 525

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.400e-43
Identity = 75/155 (48.39%), Postives = 107/155 (69.03%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +D+N FH  +GHA E +LR+TA++LG+ L G +  C GCS+ K + K I   T+  +DK  GR+FV++ G+K VASIGGK Y +++ DDF+R  W +F+R KSD  + F  FLA+ R  G PS++E+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  391 MDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFT 545

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 7.290e-43
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I R T  R+DK  GR+FVD+ G K  AS+GGK Y +++ DDF+R TW +F+R KSD  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  130 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 284

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.890e-42
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I R T  R+DK  GR+FVD+ G K +AS+GGK Y +++ DDF+R TW +F++ +SD    F  FLA  R    PS VE+VRSD GGEF  G+FA +C    I+Q+FT
Sbjct:  252 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFT 406

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.490e-41
Identity = 76/155 (49.03%), Postives = 102/155 (65.81%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEF-KGDFAKLCRRHNIRQQFT 154
            +DIN FH  + H+ E LLR+TA++LG  L G +  C GCS++K + K I   T  R+DK  GR+FVD+ G K +AS+GGK Y +++ DDF+R TW  F+R KSD  + F  FLA  R  G PS VE+VRSD GGEF  G+F  +C    I+Q+FT
Sbjct:  185 MDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFT 339

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.300e-41
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 154
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ + TSTRA K   R+++D+ G+    SIGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P  V   R+D GGEF+G FA++CRRH I+++FT
Sbjct:  130 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFT 284

[Close]

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.420e-41
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 0

Query:    1 VDINTFHASHGHAPEKLLRSTAQQLGVVL-EGTLRECEGCSVAKELDKPIGRTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMRQKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIRQQFT 154
             D+N +H +HGHA E LLR TA+Q GV L +G L  C GCS++K   KP+ + TSTRA + F R+++D+ G     SIGG  Y L+I DDFSR+T   F++ KSD    FE+FLAD R  G P    + R+D GGEF+G FA++CRRH I+Q+FT
Sbjct:  639 TDLNEYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFT 793

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot

BLAST of mRNA_H-elongata_contig79317.15592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JGJ0_9PHAE	4.040e-45	50.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K2M6_9PHAE	8.180e-44	49.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBA7_9PHAE	9.440e-44	49.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	9.490e-44	49.68	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH25_9PHAE	2.400e-43	48.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L3Y0_9PHAE	7.290e-43	50.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	6.890e-42	48.39	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JRL9_9PHAE	2.490e-41	49.03	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5L1A7_9PHAE	3.300e-41	50.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JAQ2_9PHAE	3.420e-41	50.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 51..154 e-value: 4.3E-15 score: 57.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 61..154 e-value: 6.7E-12 score: 45.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 44..154 score: 11.329
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..149
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 7..149
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 56..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig79317	contig	H-elongata_contig79317:5..466 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig79317.15592.1	mRNA_H-elongata_contig79317.15592.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig79317 5..466 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig79317.15592.1 ID=prot_H-elongata_contig79317.15592.1|Name=mRNA_H-elongata_contig79317.15592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
VDINTFHASHGHAPEKLLRSTAQQLGVVLEGTLRECEGCSVAKELDKPIG
RTTSTRADKVFGRLFVDICGEKSVASIGGKRYMLVICDDFSRFTWTHFMR
QKSDTVALFEQFLADERVAGTPSVVEVVRSDEGGEFKGDFAKLCRRHNIR
QQFT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf