prot_H-elongata_contig79279.15587.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig79279.15587.1
Unique Nameprot_H-elongata_contig79279.15587.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length176
Homology
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.060e-33
Identity = 75/172 (43.60%), Postives = 110/172 (63.95%), Query Frame = 0
Query:    1 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            +TRPDI+ +   + + +  P  IHW+AA   L Y +RT  LGI++      G T L A++DADY      RRSVSGG VM AGGAI+WFS+ Q     + +++S+YVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++ K+P S   ++H+D+++  +R  VD
Sbjct:  547 LTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFT-LIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLS-TTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVD 716          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.950e-33
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 0
Query:    1 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            +TRPDI+ A   + +    P  IHWRAA   L Y  RT   GI++  +    G  L  + DADY      RRSVSGG VM AGGAI+WFS+ QK    + +++++YVA+A+M  E+ FLR+V  FM P  +   I ++EDNEGAI++ K+P S+  ++H+D+++  +R  VD
Sbjct:  176 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQ-RGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 345          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.700e-33
Identity = 67/170 (39.41%), Postives = 104/170 (61.18%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            TRPD++F   QL +  DNP   HWRAA++AL+YL  TR  G+  GG        LSA++DADY  CPDTRR VSG  ++  G  ISW ++ Q +   + ++E+++VAL+  + E  +++Q+   +    D  + I+EDN+  I +  N    RR++H+D++Y  VRD V+
Sbjct: 1789 TRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLS-TTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAHNSEHHRRSKHIDVRYMFVRDLVE 1957          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.450e-33
Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 0
Query:    1 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGT----KLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            +TRPDI+ +   + + +  P  IHW+AA   L Y  RT   GI++     Q GT     L  +++ADY      RRSVSGG VM AGGAI+WFS+ QK    + +++++YVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++ K+P S+  ++H+D+++  +R  VD
Sbjct:  228 LTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISF-----QSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 397          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 4.660e-33
Identity = 68/171 (39.77%), Postives = 109/171 (63.74%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            TRPDI+ A   + +   +P  +HW+AA   L Y+ RT  +GIT+  +    G  +  ++DADY      RRSVSGG VM  GG ++WFSR QK    + ++E++YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++M NP ++  ++H+D+++  +R+ V+
Sbjct:  169 TRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVE 337          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.490e-32
Identity = 74/172 (43.02%), Postives = 107/172 (62.21%), Query Frame = 0
Query:    1 MTRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPP-IDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            +TRPDI+ A   + +    P  IHWRAA   L Y  RT   GI++  +    G  L  + DADY      RRSVSGG VM AGGAI+WFS+ QK    + +++++YVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++ K+P S+  ++H+D+++  +R  VD
Sbjct:  480 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQ-RGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLS-TTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVD 649          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.740e-32
Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            TRPDI+ A   + +   +P  +HW+AA   L Y+ RT  +GIT+  +    G  +  ++DADY      RRSVSGG VM  GG ++WFSR QK    + ++E++YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++  NP ++  ++H+D+++  +R+ V+
Sbjct:  114 TRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 282          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.000e-32
Identity = 66/170 (38.82%), Postives = 103/170 (60.59%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            TRPD++F   QL +  DNP   HWRAA++AL+YL  TR  G+  GG        LSA++DADY  CPDTRR VSG  ++  G  ISW ++ Q +   + ++E+++VAL+  + E  +++Q+   +    D  + I+EDN+  I + +N     R++H D++Y  VRD V+
Sbjct:  645 TRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLS-TTEAEFVALSLCIQECLYIQQLASELKQSSDQPVVIYEDNQSTIHIAQNSEHHGRSKHFDVRYMFVRDLVE 813          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.480e-32
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKI--NDNPIHWRAAQKALQYLWRTRDLGITYGGKPGQGGTK-LSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVDGG 171
            TRPD+++   QL +   N  P HW A Q+AL+YL  TR  GI  GG         LSA++DA+Y +C DTRR +SG   +  G  +SW ++ Q +   + ++E+++VALA  + EL +LRQ+   +    D  + + EDN+  IK+  N     R++H+D++Y  VRD VD G
Sbjct:   20 TRPDLAYTLQQLSQFLHNPGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLS-TTEAEFVALALCIQELLYLRQLASELQQTSDQPVLVDEDNQSTIKIATNAELHGRSKHIDVRYMFVRDLVDSG 191          
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.270e-31
Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 0
Query:    2 TRPDISFAAHQLEKINDNP--IHWRAAQKALQYLWRTRDLGITYGGKPGQGGTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASSESKYVALAEMVNELRFLRQVKEFMTPPIDV-AIKIHEDNEGAIKMMKNPFSSRRTRHVDIKYPIVRDAVD 169
            TRPDI+ A   + +   +P  +HW+AA   L Y+ RT  +GIT+  +    G  +  ++DADY      RRSVSGG VM  GG ++WFSR QK    + ++E++YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++  NP ++  ++H+D+++  +R+ V+
Sbjct:  231 TRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFE-RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLS-TTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 399          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79279.15587.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWA6_9PHAE1.060e-3343.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWK8_9PHAE1.950e-3342.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0W780_9STRA2.700e-3339.41Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JRZ9_9PHAE4.450e-3341.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE4.660e-3339.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE1.490e-3243.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KP70_9PHAE1.740e-3239.18Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6G0W6P6_9STRA4.000e-3238.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4YVS9_9STRA8.480e-3238.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6H5JEF2_9PHAE1.270e-3139.18Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..168
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79279contigH-elongata_contig79279:2396..2923 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79279.15587.1mRNA_H-elongata_contig79279.15587.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig79279 2396..2926 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig79279.15587.1 ID=prot_H-elongata_contig79279.15587.1|Name=mRNA_H-elongata_contig79279.15587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MTRPDISFAAHQLEKINDNPIHWRAAQKALQYLWRTRDLGITYGGKPGQG
GTKLSAWIDADYGICPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAAASS
ESKYVALAEMVNELRFLRQVKEFMTPPIDVAIKIHEDNEGAIKMMKNPFS
SRRTRHVDIKYPIVRDAVDGGGWFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like