prot_H-elongata_contig78917.15555.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78917.15555.1
Unique Nameprot_H-elongata_contig78917.15555.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length220
Homology
BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: D7G758_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G758_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.800e-113
Identity = 171/215 (79.53%), Postives = 195/215 (90.70%), Query Frame = 0
Query:    6 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 220
            VNRQIKIEEIVNAEVSAL  ++LH+ ++FRY    LE  MEAAWRHTD+LIFQSRYQEILLLVQDDPLEDL+R+II+VDDE LA++AHR KSGV RD LGYLRGVS++L+KLRT RLSSEGRVLPP HFGIL+ILASMLLFGFTLASA+PP+ +G V  AFES+VLFTLLLFSFS+LLEFALDLTNPF+GRYKVRRTTTTA++VKIRSEIV+V G
Sbjct:   78 VNRQIKIEEIVNAEVSALLAILLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLLFSFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMG 292          
BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: A0A6H5JLZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ7_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 5.260e-111
Identity = 170/215 (79.07%), Postives = 195/215 (90.70%), Query Frame = 0
Query:    6 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 220
            VNRQIKIEEIVNAEVSAL  +VLH+ ++FRY    LE  MEAAWRHTD+LIFQSRYQEILLLVQDDPLEDL+R+II+VDDE LA++AHR KSGV RD LGYLRGVS++L+KLRT RLSSEGRVLPP HFGIL+ILASMLLFGFTLASA+PP+ +G V  AFES+VLFTLL+F+FS+LLEFALDLTNPF+GRYKVRRTTTTA++VKIRSEIV+V G
Sbjct:  200 VNRQIKIEEIVNAEVSALLSIVLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLVFNFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMG 414          
BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Match: A0A835YX84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX84_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.650e-68
Identity = 123/220 (55.91%), Postives = 158/220 (71.82%), Query Frame = 0
Query:    6 VNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWRHTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVDRDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTLASARPPSPEGS-----VPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVRRTTTTAVLVKIRSEIVSVRG 220
            VNRQ +IEE+VN E++A++ L+ HL +FF  D +  E  ++A WRHTD LIF SRYQEIL LVQ D +E+L+RMII VD++  A   H  K  ++R+LLGYLR + AE+ +LR  R+S+EGRVLPP HF IL  LA +LLFGFTL S + P  + +     VP   ES++LF LL+ +FS LL FALDLTNPF GRYKVRRTT TA L+KIR++IV   G
Sbjct:  120 VNRQNRIEELVNQELAAMTTLLWHLIDFFDGDPEKREQALKAVWRHTDQLIFNSRYQEILALVQGDSIEELMRMIIRVDEKDTAQNTH--KPNINRELLGYLRPLGAEINRLRAMRISAEGRVLPPVHFFILGSLAMLLLFGFTLTSMQAPLVDDTAAVLQVPQ--ESRILFALLVNAFSALLGFALDLTNPFNGRYKVRRTTATAYLIKIRNDIVQTLG 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78917.15555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G758_ECTSI1.800e-11379.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ7_9PHAE5.260e-11179.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX84_9STRA2.650e-6855.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025333Protein of unknown function DUF4239PFAMPF14023DUF4239coord: 7..207
e-value: 6.2E-23
score: 81.7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 170..190
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 191..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..150
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 151..169
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..127
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 128..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78917contigH-elongata_contig78917:420..2785 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78917.15555.1mRNA_H-elongata_contig78917.15555.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78917 420..2785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78917.15555.1 ID=prot_H-elongata_contig78917.15555.1|Name=mRNA_H-elongata_contig78917.15555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp
MLVGKVNRQIKIEEIVNAEVSALSVLVLHLREFFRYDRDDLELCMEAAWR
HTDSLIFQSRYQEILLLVQDDPLEDLLRMIISVDDETLATEAHRGKSGVD
RDLLGYLRGVSAELIKLRTNRLSSEGRVLPPAHFGILIILASMLLFGFTL
ASARPPSPEGSVPTAFESQVLFTLLLFSFSVLLEFALDLTNPFMGRYKVR
RTTTTAVLVKIRSEIVSVRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025333DUF4239