prot_H-elongata_contig78806.15549.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78806.15549.1
Unique Nameprot_H-elongata_contig78806.15549.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: D7FWE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 40
            +VRVAVVLPTN WGGEGCLGAE+G+GYLHRLP SCRS
Sbjct:  171 EVRVAVVLPTNVWGGEGCLGAEVGHGYLHRLPQSCRS 207          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A835YI02_9STRA (GRASP55/65 PDZ-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI02_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.270e-12
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 40
            +VRV VVLPT  WGGEGCLGAE+ +GYLHRLPA CR+
Sbjct:  173 QVRVVVVLPTLEWGGEGCLGAEMAHGYLHRLPAQCRT 209          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S3ZJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJU3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.010e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 39
            +VRVAVV+PT  WGG+GCLGA++ +GYLHRLP  CR
Sbjct:  171 EVRVAVVVPTYQWGGDGCLGADVAHGYLHRLPTRCR 206          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: M4C4E4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4E4_HYAAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.660e-11
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 40
            L  +VR+  ++PT +WGG+G LGAE+G+GYLHRLP++CR+
Sbjct:  115 LDDQVRIVTIVPTESWGGDGVLGAEVGHGYLHRLPSACRN 154          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S2WEH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEH5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-10
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 39
            +VRVA+V+PTN W G+GCLG  +G+GYLHRLP  C+
Sbjct:  171 EVRVAIVMPTNEWNGDGCLGISVGHGYLHRLPHQCK 206          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: G4YYH1_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YYH1_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 1.960e-10
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 40
            L  +VR+  ++PT  WGG+G LGAE+G+GYLHRLP+ CRS
Sbjct:  184 LEDQVRIVSIVPTERWGGDGVLGAEVGHGYLHRLPSVCRS 223          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S3JXZ5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXZ5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-10
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 39
            +VRVA ++PT  WGG GCLGA + +GYLHRLPA CR
Sbjct:  171 EVRVASLVPTRQWGGNGCLGANVAHGYLHRLPARCR 206          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A0P1AHK2_PLAHL (Golgi reassembly stacking protein GRASP65, contains PDZ domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHK2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-10
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 39
            L  +VR+  ++PT  WGGEG LGAE+G+GYLHRLP+ CR
Sbjct:  183 LEDQVRIVSIVPTERWGGEGILGAEVGHGYLHRLPSVCR 221          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: A0A7S2H0B5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0B5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.510e-10
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0
Query:    4 KVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS 40
            +VR AVV+PTN W G+G LG  +G+GYLHRLPASC++
Sbjct:  171 EVRTAVVMPTNDWKGQGSLGISVGHGYLHRLPASCKT 207          
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Match: H3HB15_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB15_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 6.590e-10
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    1 LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCR 39
            L  +VR+  ++PT  WGG+G LGAE+G+GYLHRLP+ CR
Sbjct:  187 LEDQVRIVSIVPTERWGGDGVLGAEVGHGYLHRLPSVCR 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78806.15549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE1_ECTSI1.240e-1586.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YI02_9STRA4.270e-1275.68GRASP55/65 PDZ-like domain-containing protein n=1 ... [more]
A0A7S3ZJU3_9STRA3.010e-1169.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M4C4E4_HYAAE7.660e-1157.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S2WEH5_9STRA1.300e-1063.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G4YYH1_PHYSP1.960e-1060.00Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A7S3JXZ5_9STRA3.360e-1066.67Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A0P1AHK2_PLAHL3.710e-1061.54Golgi reassembly stacking protein GRASP65, contain... [more]
A0A7S2H0B5_9STRA5.510e-1064.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
H3HB15_PHYRM6.590e-1058.97Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 2..40
e-value: 5.4E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR12893:SF0GRASP65coord: 5..39
IPR024958GRASP55/65 PDZ-like domainPFAMPF04495GRASP55_65coord: 4..36
e-value: 1.0E-9
score: 38.8
IPR007583GRASP55/65PANTHERPTHR12893GOLGI REASSEMBLY STACKING PROTEIN GRASPcoord: 5..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78806contigH-elongata_contig78806:2698..2817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78806.15549.1mRNA_H-elongata_contig78806.15549.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78806 2698..2817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78806.15549.1 ID=prot_H-elongata_contig78806.15549.1|Name=mRNA_H-elongata_contig78806.15549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
LAPKVRVAVVLPTNAWGGEGCLGAEIGYGYLHRLPASCRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024958GRASP55/65_PDZ
IPR007583GRASP55_65