prot_H-elongata_contig7874.15543.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7874.15543.1
Unique Nameprot_H-elongata_contig7874.15543.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length366
Homology
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.110e-26
Identity = 76/161 (47.20%), Postives = 89/161 (55.28%), Query Frame = 0
Query:    1 EIVFRPQPLSIAIFPRNNEVPAGCGSGKGVRAGTGAVDDGSASSRF-------AVAVTGFVGAERAAWEQLIEHMGAEMCKNLKRQGTTHLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSEVLYHPDGAVRQLAVAGKTVAQEMARKTVALP 154
            E  FRPQP  I  F         CGS      GT                   A+AVTGFVGAERA WE LI+ MGA MCKNLK++ TTHLVCKEAKG+K++ A++WGVPVVTA WLL CA  GY  G E  + P  +V     +G  V +  A K V  P
Sbjct:  813 ERAFRPQPWPIRTFS-----DVSCGSSFSSSPGTXXXXXXXXRKNVTARDRPPAIAVTGFVGAERAGWELLIQRMGATMCKNLKKRVTTHLVCKEAKGEKFERAIQWGVPVVTAGWLLRCAEHGYEPGLEGSFAPPQSVSTSNRSGTKVTK-FAVKAVTAP 967          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.770e-19
Identity = 76/198 (38.38%), Postives = 91/198 (45.96%), Query Frame = 0
Query:    1 EIVFRPQPLSIAIFPRNNEVPAGCGSGKGVRAGTGAVDDGSASSRF-------AVAVTGFVGAERAAWEQLIEHMGAEMCKNLKRQGTTHLVCKE----------------AKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSEVLYHPDGAVRQLAVAGKTVAQEMARKTVALPVILERDAPVRCTASPA-EDKP 174
            E  FRPQP  I  F         CGS      GT                   A+AVTGFVG ERA WE LI+ MGA MCKNLK++ TTHLV  +                AKG+K++ A++WGVPVVTA WLL CA  G+  G E  + P  ++    VA    A E      A        AP  C   P  E+KP
Sbjct:  934 ERAFRPQPWPIRTFS-----DVSCGSSFSSSPGTXXXXXXXXRKNVTARDRPPAIAVTGFVGTERAGWELLIQRMGATMCKNLKKRVTTHLVTIDSVLDNLADGYPRVGDVAKGEKFERAIQWGVPVVTAGWLLRCAEHGFEPGLEGSFAPPQSLS--TVAPVDTATESTSAAAAA-------APATCVGVPVDENKP 1117          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: UPI00067C8A13 (DNA topoisomerase 2-binding protein 1-B n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067C8A13)

HSP 1 Score: 65.9 bits (159), Expect = 6.020e-8
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   53 FVGAERAAWEQLIEHMGA----EMCKN--LKRQGTTHLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYR 119
            + G ERA  ++L + +GA      C+      Q +THL+C    GDKY+ ALKWG+P VTA+WL+ CA++G R
Sbjct:  664 YSGVERAFLDELAKLLGATTQLRFCRRNTATAQASTHLICPTPSGDKYQGALKWGLPAVTADWLMQCAKEGRR 736          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: A0A2Z5U7B4_PIEBR (Uncharacterized protein (Fragment) n=1 Tax=Pieris brassicae TaxID=7116 RepID=A0A2Z5U7B4_PIEBR)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-7
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 0
Query:   39 DGSASSRFAVAVTGFVGAERAAWEQLIEHMGA----EMCKN--LKRQGTTHLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSE 123
            DG   +     ++ + G ERA  ++L + +GA      C+      Q +THL+C    GDKY  ALKWG+P VTAEWLL C   G R   +
Sbjct:  352 DGEPLNGVVACLSTYSGIERAFLDELAKLLGATTQLRFCRRNTANAQASTHLICPTPSGDKYLGALKWGLPAVTAEWLLACLEKGKRVSEK 442          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: A0A821UUR1_9NEOP (Hypothetical protein n=6 Tax=Pieris TaxID=7115 RepID=A0A821UUR1_9NEOP)

HSP 1 Score: 63.5 bits (153), Expect = 3.330e-7
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0
Query:   53 FVGAERAAWEQLIEHMGA----EMCKN--LKRQGTTHLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSE 123
            + G ERA  ++L + +GA      C+      Q +THL+C    GDKY  ALKWG+P VTAEWLL C   G R   +
Sbjct:  652 YSGIERAFLDELAKLLGATTQLRFCRRNTANAQASTHLICPTPSGDKYLGALKWGLPAVTAEWLLACLEKGKRVSEK 728          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: A0A7S0Z7G9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z7G9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.470e-7
Identity = 31/74 (41.89%), Postives = 38/74 (51.35%), Query Frame = 0
Query:   78 RQGTTHLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSEVLYHPDGAVRQLAVAGKTVAQEMARKTV 151
            R   THLV   A G KY+ A KWG+ VVTAEWL  C + G     E  + P G +   A   + V QE  R +V
Sbjct:    3 RTKNTHLVVPTADGAKYEAAKKWGLKVVTAEWLYACVKSGSHV-DESTFEPGGEITPKADTSEHVTQEKTRDSV 75          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: UPI000E6D71E6 (DNA topoisomerase 2-binding protein 1 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D71E6)

HSP 1 Score: 62.8 bits (151), Expect = 5.810e-7
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0
Query:   53 FVGAERAAWEQLIEHMGAEMCKNLKRQGT------THLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYRAGSE 123
            + G ERA  ++L + +GA       R+ T      THL+C    GDKY  ALKWG+P VTA WLL CA +G R   +
Sbjct:  659 YSGVERAFLDELAKLLGATTQLRFCRRNTANALASTHLICPSPVGDKYIGALKWGLPAVTAAWLLACAEEGRRVSEK 735          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: UPI0009E56B5D (DNA topoisomerase 2-binding protein 1-A-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E56B5D)

HSP 1 Score: 62.8 bits (151), Expect = 6.120e-7
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query:   48 VAVTGFVGAERAAWEQLIEHMGAEMCKNLKRQGT------THLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDG 117
            ++++ F G ER    Q+ E +GA   +   R+ +      THL+C++  GDKYK A+KW +PVVT EWL  CA  G
Sbjct:  679 LSISQFTGVERDHMYQVAELLGAHCQEYFVRKASSNYHASTHLLCRDPDGDKYKAAVKWHIPVVTREWLFACAASG 754          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: UPI00096B4321 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B4321)

HSP 1 Score: 62.4 bits (150), Expect = 7.890e-7
Identity = 43/123 (34.96%), Postives = 55/123 (44.72%), Query Frame = 0
Query:   37 VDDGSASSRFAVAVTGFVGAERAAWEQLIEHMGAEMCKNLKRQGT--------THLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDG-------YRAGSEVLYHPDGAVRQLAVAGKTVAQ 144
            + D +  +   +  +GF+  ER     LIE MG      L R  +        THL+  EA G KY  ALKWG+PVVT +WLL CA+ G       Y  G         A  QLA   K V +
Sbjct:  705 IQDTTTLANCVITCSGFISYERNFLRILIEAMGGRCQDQLARVTSLEKHVVESTHLISVEASGKKYSAALKWGLPVVTKDWLLECAKTGKFIPENDYLLGDSKAPERSRAPSQLAAIPKRVTE 827          
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Match: A0A5E4PRB1_9NEOP (BRCT domain-containing protein (Fragment) n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4PRB1_9NEOP)

HSP 1 Score: 62.0 bits (149), Expect = 8.440e-7
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0
Query:   53 FVGAERAAWEQLIEHMGA----EMCKNLKRQGT--THLVCKEAKGDKYKTALKWGVPVVTAEWLLLCARDGYR 119
            + G ERA  ++L E  GA      C+      T  THL+C    GDKY+ A+KWG+P VTA+WLL CA  G R
Sbjct:   70 YSGVERAFLDRLAELCGATTQLRFCRRTTANATASTHLICPTPVGDKYQGAVKWGLPAVTAQWLLDCAEKGVR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7874.15543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G795_ECTSI1.110e-2647.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJL2_9PHAE2.770e-1938.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00067C8A136.020e-843.84DNA topoisomerase 2-binding protein 1-B n=1 Tax=Am... [more]
A0A2Z5U7B4_PIEBR1.290e-738.46Uncharacterized protein (Fragment) n=1 Tax=Pieris ... [more]
A0A821UUR1_9NEOP3.330e-742.86Hypothetical protein n=6 Tax=Pieris TaxID=7115 Rep... [more]
A0A7S0Z7G9_9CHLO5.470e-741.89Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
UPI000E6D71E65.810e-742.86DNA topoisomerase 2-binding protein 1 n=1 Tax=Hypo... [more]
UPI0009E56B5D6.120e-740.79DNA topoisomerase 2-binding protein 1-A-like n=1 T... [more]
UPI00096B43217.890e-734.96LOW QUALITY PROTEIN: DNA topoisomerase 2-binding p... [more]
A0A5E4PRB1_9NEOP8.440e-745.21BRCT domain-containing protein (Fragment) n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 40..117
e-value: 2.5E-10
score: 50.3
IPR001357BRCT domainPFAMPF12738PTCB-BRCTcoord: 48..109
e-value: 4.6E-20
score: 71.3
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 48..113
score: 12.255
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 42..131
e-value: 3.5E-22
score: 80.6
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 48..121
NoneNo IPR availablePANTHERPTHR13561DNA REPLICATION REGULATOR DPB11-RELATEDcoord: 45..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7874contigH-elongata_contig7874:8720..10195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7874.15543.1mRNA_H-elongata_contig7874.15543.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7874 8718..10195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7874.15543.1 ID=prot_H-elongata_contig7874.15543.1|Name=mRNA_H-elongata_contig7874.15543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=366bp
EIVFRPQPLSIAIFPRNNEVPAGCGSGKGVRAGTGAVDDGSASSRFAVAV
TGFVGAERAAWEQLIEHMGAEMCKNLKRQGTTHLVCKEAKGDKYKTALKW
GVPVVTAEWLLLCARDGYRAGSEVLYHPDGAVRQLAVAGKTVAQEMARKT
VALPVILERDAPVRCTASPAEDKPGNTTGGGVGIQQSALSKAAESKEGHQ
LERSSDARAVGTTAAPRMTSRPGRGYLAPSTGDDGSEIKSQRGNAAGKKA
GARKSVEVRRESLAIGDGDGGQGLSAAVTPDTPATAATGDLAPTTSELER
QLRSMLSAAEGGVGAGAAATATAAASLEVPAHRRRLRLSVWGGGRPAPLH
AVLAAATTTMAPSTAG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf