prot_H-elongata_contig78435.15512.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78435.15512.1
Unique Nameprot_H-elongata_contig78435.15512.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length146
Homology
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 8.540e-83
Identity = 118/145 (81.38%), Postives = 134/145 (92.41%), Query Frame = 0
Query:    1 MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 145
            MQ+KKKRHNTNP RGPYHFRSP++IFWRTVRGMLP KT RG+EAL RLSCFEGIP P+DKKKRMVVPNALQVIR+APGRRFCVLGRLS EVGWPH +LIKRLEAQRK+KSEAYYVDKKA K++K+ A A+A+L++V PVLEE+GF
Sbjct:   54 MQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 220 bits (561), Expect = 6.560e-71
Identity = 103/143 (72.03%), Postives = 126/143 (88.11%), Query Frame = 0
Query:    2 QFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 144
            QF+KKR NTNP+RGP+HFRSP++IFWRT+RGM+PHKT RGQ A+ RL  FEGIP PFDK+KRMVVP AL+V+R+APGR+ CVLGRLSTEVGW HGDL++RLEA+RKV+SEA+Y  KKAN +++  AEA ADLS+VTPVLE +G
Sbjct:   56 QFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 202 bits (514), Expect = 8.900e-64
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0
Query:    1 MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFG 144
            + F +KR NTNPSRGP+HFR+PS+IFWRTVRGMLPHKTERGQEAL RL  FEGIP P+DK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + D++ RLE +RKV S AYY  KKA  ++K  A   ADLS VTPVLE FG
Sbjct:   54 LMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 188 bits (478), Expect = 4.200e-58
Identity = 91/147 (61.90%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    1 MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQA--DLSSVTPVLEEFGF 145
            MQF +KR NTNP RGP+H+R+PS+I WRT+RGMLPHKT RG +AL RL+ FEGIP P+D KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RK+K+EAYY  KKA    K  AE +A  +LS+V  VL  FG+
Sbjct:   56 MQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY 202          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 187 bits (476), Expect = 4.660e-58
Identity = 89/134 (66.42%), Postives = 109/134 (81.34%), Query Frame = 0
Query:    2 QFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSS 135
            QF KKR NTNP+RGP+HFRSP++IFWRT+RGMLPHKT RGQ AL RL+CFEGIPEP+DKKKR+VVP+AL+ +R+   R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA   +K  A A ADLS+
Sbjct:   61 QFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S3H512_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H512_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.940e-57
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = 0
Query:    2 QFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 145
            QF KKR NTNP RGP+HFRSP++IFWRT+RGMLPHKT +GQ AL RL+ FEGIPEP+DKKKR+VVP+AL+ +R+   R F VLG LS EVGW + DL+ +LEAQRK+K +AYY +KKA   +K  A A ADLS V  +L   G+
Sbjct:   54 QFIKKRMNTNPRRGPFHFRSPARIFWRTLRGMLPHKTVKGQLALGRLAAFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQIALKSKATASADLSPVNAILAPLGY 197          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 186 bits (471), Expect = 3.040e-57
Identity = 86/143 (60.14%), Postives = 113/143 (79.02%), Query Frame = 0
Query:    3 FKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 145
            F +KR NTNP+RGP HFRSPSK+FWRTVRGMLPHKT+RG +AL RL  FEGIP P+DK KRMVVPNAL+V+R+ P R++C LGR+++EVGW + D++ RLEA+RKV SEAYY  KKA  +++  A+A A +  +   L+ +G+
Sbjct:   56 FLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: UPI000A2A5613 (60S ribosomal protein L13a n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5613)

HSP 1 Score: 183 bits (465), Expect = 4.600e-56
Identity = 86/147 (58.50%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    1 MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQ--ADLSSVTPVLEEFGF 145
            + F +KR NT PS GP+HFR+PS+IFWRTVRGM+PHKT+RG EA+ RL  F+G+P P+DK+KRMVVP+AL+VIR+ PGR+FCVLGRLS EVGW + D+I  LE +RK KS  Y+  KK  +++K+ AE    ++L SV  VLE +G+
Sbjct:   72 LDFLRKRTNTKPSHGPFHFRAPSRIFWRTVRGMIPHKTKRGTEAMNRLKVFDGVPHPYDKEKRMVVPSALRVIRLKPGRKFCVLGRLSHEVGWKYQDIISTLEEKRKAKSAVYFXHKKKLQKLKDKAEKSKASELKSVNEVLEGYGY 218          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.930e-55
Identity = 86/143 (60.14%), Postives = 111/143 (77.62%), Query Frame = 0
Query:    3 FKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF 145
            +++KRH TNP +GP H+RSP+++ WR VRGMLPHKT RGQ AL RL+ FEGIP P+DKKKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y  KKA    K  A A  DLS+VTPVLE  G+
Sbjct:   57 YRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199          
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Match: RL13A_CYAPA (60S ribosomal protein L13a n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=RL13A_CYAPA)

HSP 1 Score: 180 bits (456), Expect = 6.120e-55
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 0
Query:    3 FKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSCFEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIKRLEAQRKVKSEAYYVDKKA--NKRIKETAEAQADLSSVTPVLEEFGF 145
            F KKR NTNP RGP+HFRSP++I WRT+RGM+PHKT RG  AL+RL  FEG+P P+DK KRMV+P AL+V+R+ PGR+FCVLGRL+TEVGW H DL+ RLE +RK KS A+Y  KK   N R K      +  +++   L+ +GF
Sbjct:   56 FLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASKTANIQKELDHYGF 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78435.15512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI8.540e-8381.3860S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA6.560e-7172.0360S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A5J4Z3W8_PORPP8.900e-6468.7560S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
W7TSL6_9STRA4.200e-5861.9060s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
A0A7S0LS12_9EUKA4.660e-5866.42Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S3H512_9STRA2.940e-5762.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1TDT8_9RHOD3.040e-5760.14Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI000A2A56134.600e-5658.5060S ribosomal protein L13a n=1 Tax=Exaiptasia diap... [more]
A0A7S1TQI9_9STRA5.930e-5560.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
RL13A_CYAPA6.120e-5557.9360S ribosomal protein L13a n=1 Tax=Cyanophora para... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10coord: 1..95
e-value: 6.6E-41
score: 141.6
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 3..94
IPR005755Ribosomal protein L13, eukaryotic/archaealTIGRFAMTIGR01077TIGR01077coord: 2..93
e-value: 1.4E-32
score: 110.9
IPR005755Ribosomal protein L13, eukaryotic/archaealPANTHERPTHR11545:SF3RIBOSOMAL PROTEIN L13Acoord: 1..144
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 18..61
e-value: 6.1E-4
score: 20.0
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 1..107
e-value: 5.5E-24
score: 82.6
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 1..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78435contigH-elongata_contig78435:1368..2862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78435.15512.1mRNA_H-elongata_contig78435.15512.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78435 1368..2889 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78435.15512.1 ID=prot_H-elongata_contig78435.15512.1|Name=mRNA_H-elongata_contig78435.15512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MQFKKKRHNTNPSRGPYHFRSPSKIFWRTVRGMLPHKTERGQEALKRLSC
FEGIPEPFDKKKRMVVPNALQVIRIAPGRRFCVLGRLSTEVGWPHGDLIK
RLEAQRKVKSEAYYVDKKANKRIKETAEAQADLSSVTPVLEEFGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036899Ribosomal_L13_sf
IPR005755Ribosomal_L13_euk/arc
IPR005822Ribosomal_L13