prot_H-elongata_contig78398.15508.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78398.15508.1
Unique Nameprot_H-elongata_contig78398.15508.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: D8LS99_ECTSI (NPL4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS99_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.110e-33
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 81
            MIIRVRTHAG+WRV+ + P+TTI +LR++LSTEHNANLSD  RQPLTL PNPRG+++ L L +TLQSLGL HGDM+HL+LD
Sbjct:    1 MIIRVRTHAGVWRVNDVAPDTTIKELRQRLSTEHNANLSDDTRQPLTLKPNPRGDQDTLALESTLQSLGLGHGDMIHLNLD 81          
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A2D4BKB6_PYTIN (NPL4-like protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKB6_PYTIN)

HSP 1 Score: 53.9 bits (128), Expect = 2.920e-7
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 81
            M+IRVR+  G+WRV+GLT ++TIAD+++ +  EH A   D  R  L        + E      TL+ L L HGDM+ L  D
Sbjct:    1 MLIRVRSKNGIWRVNGLTSQSTIADIKQWVENEH-AIARDTQRLALDQQGTRVAQNE-----QTLRDLRLGHGDMLFLDYD 75          
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A329S327_9STRA (MPN domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A329S327_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-6
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 81
            M+IRVR+  G WRV GLTP +TI D++R +  +H+      A+Q LTL  + +G ++      TL+ L + HGDM+ L  D
Sbjct:    1 MLIRVRSKNGTWRVGGLTPSSTITDIKRWIFEQHSIAP---AQQQLTL--DQQGVQQTTD-TQTLRELRVGHGDMLFLDYD 75          
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A662YIT1_9STRA (Ubiquitin-like domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIT1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-6
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 81
            M+IRVR+  G WRV+G+TP +T+AD++R +S +H       A +   L  + +G +     + TL+ L + HGDM+ L  D
Sbjct:    1 MLIRVRSKTGTWRVEGVTPSSTVADVKRWISEQHAI-----APELQQLSLDQQGTRPATD-SQTLRELKVGHGDMLFLAYD 75          
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A3M6V929_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V929_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLAATLQSLGLRHGDMVHLHLD 81
            M++RVR+  G WRV+ LTP +TIAD++R +  +H+ +     +Q LTL      +        TL+ L + HGDM+ L  D
Sbjct:    1 MLVRVRSKNGTWRVEDLTPSSTIADIKRWIFEQHSISPQ---KQHLTLDLQSMQKTTD---TQTLRELRVGHGDMLFLDYD 75          
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Match: A0A0P1A5Q7_PLAHL (Nuclear pore complex, rNpl4 component (Sc Npl4) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5Q7_PLAHL)

HSP 1 Score: 49.3 bits (116), Expect = 6.670e-5
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 0
Query:    1 MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVPNPRGEKECLPLA--ATLQSLGLRHGDMVHLHLD 81
            MIIRVR+  G+WR++ LTP +TIAD++  +  +H+   +    Q LTL      ++  +  A   TL++L L HGDM+ L  +
Sbjct:    1 MIIRVRSKNGIWRIENLTPSSTIADIKLWIFEQHSIAPT---HQRLTL-----DQQATMQTADTQTLRTLQLGHGDMLFLDYE 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78398.15508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LS99_ECTSI5.110e-3371.60NPL4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2D4BKB6_PYTIN2.920e-740.74NPL4-like protein (Fragment) n=1 Tax=Pythium insid... [more]
A0A329S327_9STRA1.140e-640.74MPN domain-containing protein n=19 Tax=Phytophthor... [more]
A0A662YIT1_9STRA1.150e-637.04Ubiquitin-like domain-containing protein (Fragment... [more]
A0A3M6V929_9STRA1.910e-537.04Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1A5Q7_PLAHL6.670e-537.35Nuclear pore complex, rNpl4 component (Sc Npl4) n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024682Nuclear pore localisation protein Npl4, ubiquitin-like domainPFAMPF11543UN_NPL4coord: 1..79
e-value: 1.1E-4
score: 22.6
NoneNo IPR availableGENE3D3.10.20.90coord: 1..81
e-value: 5.5E-11
score: 44.3
NoneNo IPR availablePANTHERPTHR12710NUCLEAR PROTEIN LOCALIZATION 4coord: 1..80
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78398contigH-elongata_contig78398:1944..2186 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78398.15508.1mRNA_H-elongata_contig78398.15508.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78398 1944..2186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78398.15508.1 ID=prot_H-elongata_contig78398.15508.1|Name=mRNA_H-elongata_contig78398.15508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MIIRVRTHAGMWRVDGLTPETTIADLRRKLSTEHNANLSDGARQPLTLVP
NPRGEKECLPLAATLQSLGLRHGDMVHLHLD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024682Npl4_Ub-like_dom
IPR029071Ubiquitin-like_domsf