prot_H-elongata_contig78162.15486.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig78162.15486.1
Unique Nameprot_H-elongata_contig78162.15486.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length388
Homology
BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 4.010e-70
Identity = 184/435 (42.30%), Postives = 230/435 (52.87%), Query Frame = 0
Query:    1 LLRKATSWFTKATEPSLVTESRRGASGGDGQR--LVEHYEACLEELEEARHRTRKAVGLVAKGGR----------------------DVFGETGALCALELARLALRKNREMEMDIGRARESSQRSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPL-DEPFPSRLPPSMIVMTALWELASGSNVAELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLEGHPSGSTLPFASAAQRARLAALNALAVAK---PHRGFASGKGDDEGTAALIPSRDDPSRRLDASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKR---------------------FRRVAEHATVMTG---VSNVLEALLVAGKHEQAADVVLRGLAHQVRSRTE 383
            LL +AT W+ K+++       R    GGD Q   +V+H+E  L E+E  R   ++                                + FG  G + ALELAR AL   RE+    G       +  H+  Q++ARLCQ VFKHASEAL F EAFDA+ DNP +Q+R+ENL ALAQHMCESGRLGELC L L D P       S +V  ALW LA  S+V +LV G   G G  R NY+DCLY F+  RGE V AA AQD+ R RLE H + STLPFA+ AQRARLAALNAL+VA    P              A++ P   +  RRLD  G+P GV+T + + R A  A+ AI LA A A K                         V    +V  G   VS ++EAL +AG++E+AADVVL GLAHQ R   E
Sbjct:  702 LLDRATKWYLKSSQALRAQLLRSSGGGGDNQAELVVKHFEDALLEVERVREGLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFGGRGPVNALELARAALETERELRGSAGG------QQPHQPHQRKARLCQLVFKHASEALCFREAFDAVCDNPIDQQRKENLAALAQHMCESGRLGELCSLSLADCPRGGDWHTSRVVERALWPLARRSSVDDLV-GGPCGKGRSRVNYYDCLYAFYMARGEEVAAARAQDELRERLEAHSAASTLPFAAGAQRARLAALNALSVAGNAYPSSDXXXXXXXXXXVASICPPPGE--RRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVANAAKEEGVQEFGGRYAEXXXXXXXXXXXAVGVQVSVEVGNADVSGLVEALALAGRYEEAADVVLEGLAHQPRLMVE 1127          
BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.220e-69
Identity = 183/417 (43.88%), Postives = 227/417 (54.44%), Query Frame = 0
Query:    1 LLRKATSWFTKATEPSLVTESRRGASGGDGQR--LVEHYEACLEELEEARHRTRKAVGLVAKGGR----------------------DVFGETGALCALELARLALRKNREMEMDIGRARESSQRSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPL-DEPFPSRLPPSMIVMTALWELASGSNVAELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRR-------RLEGHPSGSTLPFASAAQRARLAALNALAVAKPHRGFASGKGDDEGTAALIPSRDDPS--RRLDASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKRFRRVAEHATVMTGVSNVLEALLVAGKHEQAADVVLRGLAHQVRSRTE 383
            LL +AT W+ K+++       R G  GG  Q   +VEH+E  L E+E  R   R+                                + FG  G + ALELAR AL   RE+    G       +      Q++ARLCQ VFKHASEAL F EAFDA+ DNP +Q+R+ENL AL QHMCESGRLGELC L L D P      PS +V +ALW LA  S+V +LV G   G G  R NY+DCLY F+  RGE V AA AQD+ R        R + H + STLPFA+ AQRARLAALNAL+VA    G A    DD   AA + S   P+  RRLD  G+P GV+T + + R A  A+ AI LA  +  +  R      TV      V+EAL + G++E+AADVVL GLAHQ R   E
Sbjct: 1121 LLDRATKWYLKSSQALRAQLLRPGGGGGHNQAESVVEHFEGALLEVERVREGLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFGGRGPVNALELARAALETERELRGSAG------DQXXXXXXQRQARLCQLVFKHASEALCFREAFDAVCDNPIDQQRKENLAALVQHMCESGRLGELCSLSLADCPHGGGWHPSGVVDSALWPLARRSSVDDLV-GGPGGKGRSRVNYYDCLYAFYMARGEEVAAARAQDELRESPARSFDRWKPHSAASTLPFAAGAQRARLAALNALSVA----GNAYPSSDDT-AAATVASICPPAGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVVKGREGGRGARVWWTVRGERRGVVEALALGGRYEEAADVVLEGLAHQPRLMVE 1525          
BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Match: A0A7R9YFK4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFK4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-5
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0
Query:  113 LCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRALAQHMCESGRLGELCKLPLDEPFPSRLPPSMIVMTALWELASGSNV-AELVRGASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLE 242
            LC  +F+ + +A  +  AF A+R NP  QRR + L  L   MCE GRL EL +LPL +  P        V+  L +LA  S++  E   G +   G     Y+  L+ F+  +G    AA+A      RLE
Sbjct: 1024 LCSALFRLSVDAGDYAGAFQALRRNPNPQRRSDALSRLVAVMCEEGRLLELIELPLGDGSPET---ETQVIHVLEQLAGASDIHGEFAIGPAPALG---PKYYGALFAFYMKKGMLKDAADAMYRASLRLE 1148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78162.15486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLL3_9PHAE4.010e-7042.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ0_ECTSI5.220e-6943.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YFK4_9STRA2.760e-534.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..54
IPR021717Nucleoporin Nup120/160PANTHERPTHR21286NUCLEAR PORE COMPLEX PROTEIN NUP160coord: 37..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78162contigH-elongata_contig78162:233..2631 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78162.15486.1mRNA_H-elongata_contig78162.15486.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig78162 233..2631 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig78162.15486.1 ID=prot_H-elongata_contig78162.15486.1|Name=mRNA_H-elongata_contig78162.15486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=388bp
LLRKATSWFTKATEPSLVTESRRGASGGDGQRLVEHYEACLEELEEARHR
TRKAVGLVAKGGRDVFGETGALCALELARLALRKNREMEMDIGRARESSQ
RSAHKKQQQRARLCQGVFKHASEALKFDEAFDAIRDNPEEQRREENLRAL
AQHMCESGRLGELCKLPLDEPFPSRLPPSMIVMTALWELASGSNVAELVR
GASAGDGLGRTNYFDCLYTFFSVRGEFVLAAEAQDDFRRRLEGHPSGSTL
PFASAAQRARLAALNALAVAKPHRGFASGKGDDEGTAALIPSRDDPSRRL
DASGQPVGVQTTSSMARIAAVASAAIDLAEARAHKRFRRVAEHATVMTGV
SNVLEALLVAGKHEQAADVVLRGLAHQVRSRTEGCSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021717Nucleoporin_Nup160