prot_H-elongata_contig77694.15448.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig77694.15448.1
Unique Nameprot_H-elongata_contig77694.15448.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length137
Homology
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BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: A0A6H5KB87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB87_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.220e-32
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 0 
Query:   10 DVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYAKAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 133
            D+   DD+LLRAE+GDP A MMMG+L++VGS+E  I  ++AKAE+    AVRNG+P  Y+YLAWMHHNG++GGHLPP  QP LP GG +G + A    K     E D+R  A  +WGK  +  T+ G+G
Sbjct:  119 DMAFADDMLLRAEAGDPSATMMMGYLHMVGSEETGITPDFAKAEQ----AVRNGDPGCYAYLAWMHHNGYMGGHLPPYLQPRLPDGGGEGDERAKGDGKLASRREGDLRAMAYALWGKKRVEGTNVGRG 243
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BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.630e-31
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0 
Query:   10 DVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYAKAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 133
            D+   DD LLRAE+GDP A MMMG+L++VGS+EM I  ++AKAE+LMW+AV+NG+P  Y+YLAWMHHNGHIG          LP GG +G + A  G K     E D+R  A  +WGK+ +  T+ G+G
Sbjct:  328 DMAFADDALLRAEAGDPSATMMMGYLHMVGSEEMGITPDFAKAEQLMWEAVKNGDPGGYAYLAWMHHNGHIGXXXXXXXXXRLPDGGGEGDERAKGGGKLASRREGDLRAMAYALWGKERVDGTNVGRG 456
[Close]
BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: A0A6H5JWA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.230e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0 
Query:   51 KAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 133
            +  +LMWKAVRNG+P  Y+YLAWMHHNGHIG          LP GG +G + A  G K     E D+R  A  +WG + +  T+ G+G
Sbjct:  413 RGAQLMWKAVRNGDPGGYAYLAWMHHNGHIGXXXXXXXXXRLPDGGGEGDERAKGGGKLACRREGDLRAMAYALWGTERVEGTNVGRG 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KB87_9PHAE2.220e-3251.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU4_ECTSI1.630e-3151.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWA9_9PHAE1.230e-1345.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 18..92
e-value: 2.6E-9
score: 39.0
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 21..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77694contigH-elongata_contig77694:887..2119 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77694.15448.1mRNA_H-elongata_contig77694.15448.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig77694 886..2119 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig77694.15448.1 ID=prot_H-elongata_contig77694.15448.1|Name=mRNA_H-elongata_contig77694.15448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
GLDVNAGPRDVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYA
KAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGGDGRK
NAWAGPKTEQDMREAALEIWGKDLLAKTSWGKGGVSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf