prot_H-elongata_contig77436.15422.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig77436.15422.1
Unique Name	prot_H-elongata_contig77436.15422.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	56

Homology

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-19
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0

Query:    1 MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            MAR ARVLLSVPASSAVLERDFSTAG L+TG+RSRL+  YVEM LFLN NQEYIP+
Sbjct:  727 MARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.560e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0

Query:    1 MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIP 55
            +ARVARV+   PAS+AVLERDFS AG ++T SRS +  +YVEM +FL+ N + IP
Sbjct:  621 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.820e-10
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0

Query:    1 MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRL-AGEYVEMTLFLNENQEYIP 55
            +ARVARV+   PAS+AVLERDFS AG ++T SR  + +  YVEM LFL+ N + IP
Sbjct:    9 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.360e-10
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF TAG ++T  RS LA   V+MT FLN N+ Y+ I
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDI 94

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 57.4 bits (137), Expect = 4.180e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARV+ S+P+SSA +ERDF TAG ++T  R+ LA   V+MT FLN N+ Y+ I
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNI 62

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: W2PE29_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PE29_PHYPN)

HSP 1 Score: 56.2 bits (134), Expect = 3.120e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF  AG ++T  RS LA   V+M  FLN N+ Y+ I
Sbjct:   71 VARVLFSMPSSSAQIERDFGAAGRMVTPQRSSLAPYNVDMATFLNCNRSYVDI 123

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI)

HSP 1 Score: 56.2 bits (134), Expect = 4.740e-8
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF TAG ++T  RS L    V+M ++LN N+ Y+ I
Sbjct:  158 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYVDI 210

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BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: A0A0W8CI19_PHYNI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CI19_PHYNI)

HSP 1 Score: 56.2 bits (134), Expect = 5.790e-8
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF  AG ++T  RS LA   V+M  FLN N+ Y+ I
Sbjct:  129 VARVLFSMPSSSAQIERDFGAAGRMVTPQRSSLAPYNVDMATFLNCNRSYVDI 181

[Close]

BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: W2QQF5_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QQF5_PHYPN)

HSP 1 Score: 56.2 bits (134), Expect = 8.780e-8
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF TAG ++T  RS L    V+M ++LN N+ Y+ I
Sbjct:  386 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYVDI 438

[Close]

BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Match: W2JRK8_PHYPR (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JRK8_PHYPR)

HSP 1 Score: 56.2 bits (134), Expect = 8.810e-8
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0

Query:    4 VARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNENQEYIPI 56
            VARVL S+P+SSA +ERDF TAG ++T  RS L    V+M ++LN N+ Y+ I
Sbjct:  464 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYVDI 516

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot

BLAST of mRNA_H-elongata_contig77436.15422.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVU5_9PHAE	1.040e-19	82.14	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZ82_9PHAE	3.560e-11	58.18	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KCJ3_9PHAE	3.820e-10	57.14	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A225UGF7_9STRA	4.360e-10	58.49	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph...	[more]
H3GTQ6_PHYRM	4.180e-9	54.72	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph...	[more]
W2PE29_PHYPN	3.120e-8	54.72	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph...	[more]
A0A0W8D5H4_PHYNI	4.740e-8	52.83	Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph...	[more]
A0A0W8CI19_PHYNI	5.790e-8	54.72	Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ph...	[more]
W2QQF5_PHYPN	8.780e-8	52.83	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph...	[more]
W2JRK8_PHYPR	8.810e-8	52.83	Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 2..50 e-value: 7.2E-10 score: 38.5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 16..56
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..15
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..50

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig77436	contig	H-elongata_contig77436:1251..1418 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig77436.15422.1	mRNA_H-elongata_contig77436.15422.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig77436 1242..1418 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig77436.15422.1 ID=prot_H-elongata_contig77436.15422.1|Name=mRNA_H-elongata_contig77436.15422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MARVARVLLSVPASSAVLERDFSTAGHLLTGSRSRLAGEYVEMTLFLNEN
QEYIPI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008906	HATC_C_dom
IPR012337	RNaseH-like_sf