prot_H-elongata_contig77263.15402.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig77263.15402.1
Unique Name	prot_H-elongata_contig77263.15402.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	131

Homology

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.900e-28
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 0

Query:   22 LDILRKRYGTGITFEGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LD LR   GT  T      EFR+YCL+ G    +A+TNTPQ++G +ER GRTL AMVR +L DSG P  +WG+L  TA YL NR PH AL   TP+K L+G++A+L HLR
Sbjct:   56 LDCLRGDKGTECTCR----EFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLR 161

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.290e-27
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0

Query:   42 FRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHL 130
            F +YC + GI  +FA+TNTPQ IG +ER+GRTL  MVR +LADSG P  +W ELFMTA YL NR+PH A    TPFK LHG+EA L HL
Sbjct:  405 FCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYLGHL 493

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.010e-27
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 0

Query:   41 EFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            EFR+YCL+ G+   +A+TNTPQ+IG +ER GRTL AMVR +L DSG P  +WG L  TAVYL NR PH AL   TP+K L+ ++A+L HLR
Sbjct:  344 EFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLR 434

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.540e-27
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 0

Query:    6 NAQVWHRRMGHLHAQSLDILRKRYGTG--ITFEG-------AVSEFRQYC--------------LETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            +A +WHRR+GH++  ++ ILR+   TG  + F+        A    R Y               +E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  502 SADLWHRRLGHINPSAMKILRRNPATGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 650

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.300e-26
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  348 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 467

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L4X4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.780e-26
Identity = 60/120 (50.00%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   I       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  271 LHAYNMQVASEGYRIEILRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 390

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.040e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  462 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 581

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBJ2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.070e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  681 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 800

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5KBQ2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.080e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  317 LHAYNMQVASEGYRIEVLRCKKGGENTGDEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKRMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 436

[Close]

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Match: A0A6H5L197_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L197_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.090e-25
Identity = 59/120 (49.17%), Postives = 71/120 (59.17%), Query Frame = 0

Query:   17 LHAQSLDILRKRYGTGITF-----EGAVSEFRQYCLETGIIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAVYLKNRTPHKALKMETPFKMLHGEEADLSHLR 131
            LHA ++ +  + Y   +       E    E R YC E+ I   FAATNTPQEIGVSER G+TL A+ R +L D  FP  MWGEL MTA YL NRTPH AL   TP+  ++    DLS LR
Sbjct:  644 LHAYNMQVASEGYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLR 763

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot

BLAST of mRNA_H-elongata_contig77263.15402.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	2.900e-28	53.64	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1J1_9PHAE	1.290e-27	61.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWF9_9PHAE	3.010e-27	58.24	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L4Y1_9PHAE	6.540e-27	44.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQY8_9PHAE	5.300e-26	49.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4X4_9PHAE	5.780e-26	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JVS2_9PHAE	1.040e-25	49.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBJ2_9PHAE	1.070e-25	49.17	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KBQ2_9PHAE	1.080e-25	49.17	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5L197_9PHAE	1.090e-25	49.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 32..131 e-value: 2.2E-14 score: 55.1
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 41..131
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 41..131
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 32..124 score: 11.489
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 40..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig77263	contig	H-elongata_contig77263:2593..2985 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig77263.15402.1	mRNA_H-elongata_contig77263.15402.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig77263 2593..2985 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig77263.15402.1 ID=prot_H-elongata_contig77263.15402.1|Name=mRNA_H-elongata_contig77263.15402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MNAVANAQVWHRRMGHLHAQSLDILRKRYGTGITFEGAVSEFRQYCLETG
IIQVFAATNTPQEIGVSERVGRTLCAMVRYMLADSGFPSSMWGELFMTAV
YLKNRTPHKALKMETPFKMLHGEEADLSHLR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf