prot_H-elongata_contig76870.15356.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76870.15356.1
Unique Nameprot_H-elongata_contig76870.15356.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
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BLAST of mRNA_H-elongata_contig76870.15356.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.580e-26
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 0 
Query:    1 MSFNEAIRQSLAPH--APDTSARAAGFVGKSFAFIGLLSGVLQLVVMPWAMLRVSPLLLLSTLPLVAASGCLVTLVFPGFRTSTAAFAATKILD 92
            +SFNEAIRQ L     + +T A AAGFVG SFA IGL+SG+LQLVVMPWAM+RV+P LLL TLP+VA  G LVT V PGFRT+T AF+ TKIL+
Sbjct:  250 LSFNEAIRQGLPREEASGETGAGAAGFVGNSFAVIGLVSGILQLVVMPWAMVRVNPSLLLKTLPVVAGGGFLVTFVSPGFRTATVAFSVTKILE 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76870.15356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J832_9PHAE1.580e-2667.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..75
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..49
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76870contigH-elongata_contig76870:75..755 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76870.15356.1mRNA_H-elongata_contig76870.15356.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76870 75..779 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76870.15356.1 ID=prot_H-elongata_contig76870.15356.1|Name=mRNA_H-elongata_contig76870.15356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSFNEAIRQSLAPHAPDTSARAAGFVGKSFAFIGLLSGVLQLVVMPWAML
RVSPLLLLSTLPLVAASGCLVTLVFPGFRTSTAAFAATKILD
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