prot_H-elongata_contig76464.15318.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76464.15318.1
Unique Nameprot_H-elongata_contig76464.15318.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A085N151_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N151_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 7.500e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   13 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            C  C + ++ +   P S ++R  +    +  DL GP   A+  GNR+ +  IDD++R+ +VR LKHKS   NA+++IV ++    G K  V+RTD G E
Sbjct:  462 CECCIRGKLNQQPFPNS-KSRAAKPLELIHSDLCGPMQTATPSGNRYCLTVIDDYSRYAVVRLLKHKSQVPNAIQEIVREWTTQVGYKPKVLRTDNGKE 559          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A558HBQ0_9GAMM (DDE-type integrase/transposase/recombinase (Fragment) n=2 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HBQ0_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 1.510e-11
Identity = 35/107 (32.71%), Postives = 58/107 (54.21%), Query Frame = 0
Query:    5 QLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            +L  + ++C  C   +  R +  K   N T R    L +DL+GP    S GG +++++ +DDFTRF  V FLK KS+  + ++ I+      +G ++  IR+D G E
Sbjct:   80 KLQKVDKICGECQLGKQIRSSHKKVNSNTTSRPLELLHMDLIGPTRTESRGGKKYILVIVDDFTRFTWVSFLKDKSETLDEVKKIIKRIQNEKGSQVYKIRSDHGSE 186          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 68.9 bits (167), Expect = 2.660e-11
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 0
Query:    3 GVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            G++ SG    CV C K +  R   P+   +R       L  DL GP +  S+GG R+V+  IDD+TR   V FLK K++    L +         G +I  IR+D GGE
Sbjct:  114 GLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGE 222          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE)

HSP 1 Score: 68.6 bits (166), Expect = 3.730e-11
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   28 KSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            K +++R       L +DL GP   AS+GG RF+   +DD +R+  V FLKHKSDA    +D         GLKI +IRTDGG E
Sbjct:  239 KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTE 322          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE)

HSP 1 Score: 68.6 bits (166), Expect = 3.820e-11
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   12 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            +C  C   +  R A   +T   T+R    L IDL+GP    SLGG R++++ +DDFTR+  V FL+ K +A N +R +       +G  I  IR+D G E
Sbjct:  870 VCGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGRE 969          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LL02_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1LL02_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 5.270e-11
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 0
Query:   13 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            CV C K +  R   PKS   R++     +  D+ GP   AS+GG R+ +  IDDF+R   V FLKHK++A    +D +         ++  +RTD G E
Sbjct:   43 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 141          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: UPI001C718580 (uncharacterized protein LOC122278499 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C718580)

HSP 1 Score: 67.0 bits (162), Expect = 1.290e-10
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   12 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            +C  C   +  R A  K+T+  T +    L IDL+GP    SLGG R++++ +DDFTR+  V FL+ K++A N ++ +       +G  I  IR+D G E
Sbjct:  403 VCGSCQLGKQVRIARKKTTDILTGQSLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVGFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGRE 502          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 66.6 bits (161), Expect = 1.780e-10
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 0
Query:   11 RLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            ++C  C K ++ R   PK + ++T +    L +DL GP    ++GG R++M  IDDF+R+  V  L  KS     +RD + +     G K    R+D GGE
Sbjct:  347 QVCSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGE 447          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: A0A0V1LCB2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1LCB2_9BILA)

HSP 1 Score: 65.1 bits (157), Expect = 1.870e-10
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 0
Query:   13 CVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            CV C K +  R   PKS   R++     +  D+ GP   AS+GG R+ +  IDDF+R   V FLKHK++A    +D +         ++  +RTD G E
Sbjct:  100 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 198          
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Match: UPI001C71C67F (uncharacterized protein LOC122296892 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71C67F)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-10
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   12 LCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFHEASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLKIGVIRTDGGGE 111
            +C  C   +  R A  K+T   T++    L IDL+GP    SLGG R++++ ++DFTR+  V FL+ K++A N ++ +       +G  I  IR+D G E
Sbjct:  653 VCGSCQLGKQVRIAHKKTTAILTEQPLDLLHIDLMGPSRTESLGGKRYILVMVEDFTRYSWVEFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGRE 752          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76464.15318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085N151_9BILA7.500e-1236.36Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A558HBQ0_9GAMM1.510e-1132.71DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A1Y1LP39_PHOPY2.660e-1135.78Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9XD75_LYGHE3.730e-1144.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P9DXA8_JUGRE3.820e-1137.00uncharacterized protein LOC118344254 n=3 Tax=Jugla... [more]
A0A0V1LL02_9BILA5.270e-1135.35Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C7185801.290e-1036.00uncharacterized protein LOC122278499 n=1 Tax=Carya... [more]
A0A6V7M0T8_9HYME1.780e-1033.66Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A0V1LCB2_9BILA1.870e-1035.35Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C71C67F2.360e-1035.00uncharacterized protein LOC122296892 n=1 Tax=Carya... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 27..111
e-value: 1.0E-8
score: 36.6
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 35..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76464contigH-elongata_contig76464:634..969 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76464.15318.1mRNA_H-elongata_contig76464.15318.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76464 319..969 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76464.15318.1 ID=prot_H-elongata_contig76464.15318.1|Name=mRNA_H-elongata_contig76464.15318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAGVQLSGIWRLCVHCSKSRVRRYAVPKSTENRTDRHAGRLFIDLLGPFH
EASLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIVNDYLAPEGLK
IGVIRTDGGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf