prot_H-elongata_contig76420.15316.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig76420.15316.1
Unique Nameprot_H-elongata_contig76420.15316.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
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BLAST of mRNA_H-elongata_contig76420.15316.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.240e-19
Identity = 74/157 (47.13%), Postives = 86/157 (54.78%), Query Frame = 0 
Query:   17 RLRPNSPHSSSQRTRTFLGREGEHSSVGSIGGRSGAGASWPISRPSTYRAGSSGGHEG---SPILRTHQAPGGFSHKITPSPTFPATQ-MTSGRSGTKRPETPLAVRGYYSRNSSPSNRPVISAGASGXXXXXXXGVGVGTSVRGRFFPMSSSNALF 169
            R+  NSPHSS++    +             GGRS    SWPI RP+T R GS  G  G   SP+LR     G  SH +TPSPTF A Q M+ GR   KRPETP+ VRGYYSRN+SP NR   S+GA G       GVG  +S    FFP SS   LF
Sbjct:  275 RIGTNSPHSSNRGVAGYAAG----------GGRSSR-PSWPIPRPNTSRGGSGNGATGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPMEVRGYYSRNASPGNR---SSGAGG-------GVGARSSS---FFP-SSKAGLF 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76420.15316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC0_ECTSI1.240e-1947.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76420contigH-elongata_contig76420:308..1489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76420.15316.1mRNA_H-elongata_contig76420.15316.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig76420 299..1800 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig76420.15316.1 ID=prot_H-elongata_contig76420.15316.1|Name=mRNA_H-elongata_contig76420.15316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MQQREESSRENVFGDGRLRPNSPHSSSQRTRTFLGREGEHSSVGSIGGRS
GAGASWPISRPSTYRAGSSGGHEGSPILRTHQAPGGFSHKITPSPTFPAT
QMTSGRSGTKRPETPLAVRGYYSRNSSPSNRPVISAGASGGGGGGANGVG
VGTSVRGRFFPMSSSNALF*
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