prot_H-elongata_contig7601.15283.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7601.15283.1
Unique Nameprot_H-elongata_contig7601.15283.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length240
Homology
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: D7G2N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N9_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 5.620e-44
Identity = 101/188 (53.72%), Postives = 119/188 (63.30%), Query Frame = 0
Query:    1 MERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAA-----APSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANARA 183
            +E AK LVKATPPRG+EYLSML+ V++RE  WTQWKDV KC +    A  E   RE   AA     APS P  K+ R   S    ERAK     ++PL   F L   V   R GVP + EHLEDQRMC EDP+T  S+LPSASPLYTWRALR++G E P NL   ++GDLV+ M  LD+AQ  A A A
Sbjct:  539 IELAKRLVKATPPRGEEYLSMLQVVLNRETFWTQWKDVNKCKLAMTAAKEEETQREKDKAAGVVARAPSYP-NKRPRPSASVAAGERAK-----YSPLGAGFPLERMVSKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVKAMERLDKAQADAEAAA 720          
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Match: A0A6H5KU96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU96_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.970e-43
Identity = 99/188 (52.66%), Postives = 118/188 (62.77%), Query Frame = 0
Query:    1 MERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADAEAKAREAAAAA-----APSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLGNTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDLPSASPLYTWRALRVVGAEIPTNLANSFEGDLVEVMRYLDEAQNAANARA 183
            +E AK LVKATPPRG+EYLSML+ V++RE  WTQWKDV KC +    A+ E    E   AA     APS P  K+ R   S    ERAK     ++PL   F L       R GVP + EHLEDQRMC EDP+T  S+LPSASPLYTWRALR++G E P NL   ++GDLV+ M  LD+AQ  A A A
Sbjct:  256 IELAKRLVKATPPRGEEYLSMLQIVLNRETFWTQWKDVNKCKLAITAAEEEEAQMEKDKAAGVVPRAPSYP-NKRPRPSASVAARERAK-----YSPLGADFPLEKMASKLRAGVPTSQEHLEDQRMCAEDPDTPASELPSASPLYTWRALRLLGRENPANLVGCYDGDLVKAMERLDKAQADAEAAA 437          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7601.15283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2N9_ECTSI5.620e-4453.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU96_9PHAE2.970e-4352.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021861THO complex, subunit THOC1PFAMPF11957efThoc1coord: 4..178
e-value: 8.8E-8
score: 31.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7601contigH-elongata_contig7601:3603..5723 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7601.15283.1mRNA_H-elongata_contig7601.15283.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7601 3603..9905 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7601.15283.1 ID=prot_H-elongata_contig7601.15283.1|Name=mRNA_H-elongata_contig7601.15283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp
MERAKELVKATPPRGKEYLSMLETVIHREGAWTQWKDVGKCNVIDPVADA
EAKAREAAAAAAPSKPMRKKRRVHTSGVDVERAKRQSFTFAPLVPRFKLG
NTVRAARCGVPDTGEHLEDQRMCVEDPETDPSDLPSASPLYTWRALRVVG
AEIPTNLANSFEGDLVEVMRYLDEAQNAANARAEAAMSVSVAIAPAPASQ
KASRMPAASVSRAPTPSETPAAAAATPTHARVAVSNAAPA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021861THO_THOC1