prot_H-elongata_contig7578.15268.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7578.15268.1
Unique Nameprot_H-elongata_contig7578.15268.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length801
Homology
[Close]
BLAST of mRNA_H-elongata_contig7578.15268.1 vs. uniprot
Match: D8LTA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA7_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.070e-56
Identity = 111/159 (69.81%), Postives = 127/159 (79.87%), Query Frame = 0 
Query:  512 AAAMAAACLDRLSFSEFREEVLARTQHVHHSSGSGNGGGGDAIGGQYESIFKTLMNKIKTLEINQSLFSLYMDDVHACYQEVIAQIIREQKHARAFHSELFHDQAAQIVRLSDQWPAFQSLQGRVLDVENRMLLSSMAWFTSLLCLAIMVCSCCVSICR 670
            A   AAACLD LSFSEFREEVLARTQ    S+G     GG AIGGQYESIFKTLMNKIKTLEINQSLF LY+DDVH CYQ+VIAQ+++EQ+ ARA  S+L + QAA +  + DQWPAFQ LQ +V++VENRMLLSS+AWFTSL CL +MVCSCC   CR
Sbjct:  529 AVLSAAACLDTLSFSEFREEVLARTQQAQQSAG-----GGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQDVIAQMLQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVVEVENRMLLSSLAWFTSLFCLVLMVCSCCFKTCR 682
[Close]
BLAST of mRNA_H-elongata_contig7578.15268.1 vs. uniprot
Match: A0A6H5JRG7_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.020e-54
Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 0 
Query:  507 VDVMDAAAMA-AACLDRLSFSEFREEVLARTQHVHHSSGSGNGGGGDAIGGQYESIFKTLMNKIKTLEINQSLFSLYMDDVHACYQEVIAQIIREQKHARAFHSELFHDQAAQIVRLSDQWPAFQSLQGRVLDVENRMLLSSMAWFTSLLCLAIMVCSCCVSICR 670
            V+  D A ++ AACLD LSFSEFREEVLARTQ    S+G     GG AIGGQYESIFKTLMNKIKTLEINQSLF LY+DDVH CYQ VIAQ+I+EQ+ ARA  S+L + QAA +  + DQWPAFQ LQ +V +VENRMLLSS+AWFTSL CL ++VCSCC+  CR
Sbjct:  975 VEETDVAVLSTAACLDTLSFSEFREEVLARTQQAQQSAG-----GGVAIGGQYESIFKTLMNKIKTLEINQSLFGLYIDDVHGCYQNVIAQMIQEQERARASRSQLLNTQAAHLAHIGDQWPAFQELQAKVAEVENRMLLSSLAWFTSLFCLVLIVCSCCLKACR 1134
[Close]
BLAST of mRNA_H-elongata_contig7578.15268.1 vs. uniprot
Match: A0A4D9DBJ9_9STRA (SUN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBJ9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.280e-10
Identity = 43/143 (30.07%), Postives = 77/143 (53.85%), Query Frame = 0 
Query:  519 CLDRLSFSEFREEVLARTQHVHHSSGSGNGGGGDAIGG--QYESIFKTLMNKIKTLEINQSLFSLYMDDVHACYQEVIAQIIREQKHARAFHSELFHDQAAQIVRLSDQWPAFQSLQGRVLDVENRMLLSSMAWFTSLLCLAI 659
            CL ++  S+F+++ LA+ Q    +   G G    ++G    Y++IFKTLM+++ +LEINQS+F +Y+ ++H+C+ +V+  ++ EQ  AR    E          RL  Q    +    R+  +E+  L   +AW   + CL +
Sbjct:  709 CLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGSGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARL---EALETIGLLQARLQSQAAVNEQFLRRMQRLESMSLAGGLAWIALIACLVL 848
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7578.15268.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTA7_ECTSI1.070e-5669.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRG7_9PHAE1.020e-5467.88SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9DBJ9_9STRA2.280e-1030.07SUN domain-containing protein n=2 Tax=Monodopsidac... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 676..800
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 648..675
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..647

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7578contigH-elongata_contig7578:5438..8479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7578.15268.1mRNA_H-elongata_contig7578.15268.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7578 5341..9970 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7578.15268.1 ID=prot_H-elongata_contig7578.15268.1|Name=mRNA_H-elongata_contig7578.15268.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=801bp
MMEEMVRGVPVEIVVPASEACIGPVGADGSCREEVIADGVVGATIVVREA
STPLGSEVPTMGTGAVSDAVADVKPGDAQAVGLGQIGVQNGVADDDVGRP
LRDAGARSAAGTKKKNLKPANARRKEHRDNVAEGGAIAVEGIKKKLGEES
AVELNGTTNGEGVQNEGETQVGIEEPQPRKGIIHSTMEAISKAVHRGDGS
KPRDDVGKAEEGSASRDAGSGATSTESSGDNIECSGGGSTDTTLPPSSGS
ASIATSVAVNGANGKGITAPGNDDRKQQSTEGAGVGSIANTVDETHTLRE
TSATGEAVPSAAGRVDCDTDGTVEVDTDKEVREVAGSSARISSGHNVHFS
SEAGELGGGKSPDGCVRAAGQSLAASCGSIGRDEESASSATHDGVEIASR
GETEVSRPSRSDVPTEEGREPGDSMADSAGPDAGRMEGSASSSGTLDIDT
RVGRNDIHISREEASSGTQTVSGSAPRDLPPDNAAEPSRSALSIVDDTRE
AEFLIHVDVMDAAAMAAACLDRLSFSEFREEVLARTQHVHHSSGSGNGGG
GDAIGGQYESIFKTLMNKIKTLEINQSLFSLYMDDVHACYQEVIAQIIRE
QKHARAFHSELFHDQAAQIVRLSDQWPAFQSLQGRVLDVENRMLLSSMAW
FTSLLCLAIMVCSCCVSICRCLVVVGNGDGTAGGRGRWGGRNGRRYRHRD
WSPACAEYEGAPADAASFTNGSDSSAKTMGSCKNGGVREVTSTRATWLGV
PPGATSTQERLSVGVARSISPGAARCSSCSEVTAGIAGDMSDARLEKQRW
*
back to top