prot_H-elongata_contig75672.15257.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75672.15257.1
Unique Nameprot_H-elongata_contig75672.15257.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length210
Homology
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BLAST of mRNA_H-elongata_contig75672.15257.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.550e-23
Identity = 98/237 (41.35%), Postives = 110/237 (46.41%), Query Frame = 0 
Query:   10 TTRRSSADVVLCSLERLADT-GGVGAGAVATADVRVARSVRWSQVVLDVRGFPTATSTAALASTAALTPFAGGEP-------------------MNWALFSHLAKGATLALAVDDAPASMAASVVAAV------DEKRLAGLSSFALASAVPGPRAALXXXXXXXXXXXXTGACPRT------------------------------GTGGGGVRAELVGMLSGVQLVRRGLAERLL 190
            T RRSS DVVLCSLERLA+  GGV      +AD R+ARSVRWSQVVLDVRG  TA +                                     +NW LFS LAKGA LALA+DDA  +               +E RLAGL SFALASAVPGPRAAL            +G                                   G GG GV AEL G++S V+LVR GLA RLL
Sbjct:  730 TARRSSVDVVLCSLERLAEVDGGV------SADARLARSVRWSQVVLDVRGVSTAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAGCRFTVNWPLFSSLAKGAALALALDDAGNTXXXXXXXXXXXXVVREENRLAGLVSFALASAVPGPRAALSLGKARATSTATSGGAXXXXXXXXXXXXXXALSXXXXXXXTGGSMAAARGPGGRGVCAELAGIVSAVRLVRPGLAGRLL 960
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75672.15257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE3.550e-2341.35SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75672contigH-elongata_contig75672:1487..2729 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75672.15257.1mRNA_H-elongata_contig75672.15257.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75672 1487..2731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75672.15257.1 ID=prot_H-elongata_contig75672.15257.1|Name=mRNA_H-elongata_contig75672.15257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
HRSSALPSSTTRRSSADVVLCSLERLADTGGVGAGAVATADVRVARSVRW
SQVVLDVRGFPTATSTAALASTAALTPFAGGEPMNWALFSHLAKGATLAL
AVDDAPASMAASVVAAVDEKRLAGLSSFALASAVPGPRAALALAKARAAS
AGATGACPRTGTGGGGVRAELVGMLSGVQLVRRGLAERLLARPRAAVAAG
AAAAAAGAKG
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