prot_H-elongata_contig75317.15214.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig75317.15214.1
Unique Nameprot_H-elongata_contig75317.15214.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 7.100e-35
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 0
Query:    1 MTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            +TELKRVRAVAQYM+KELQMVPWT+T N+LK  G+ SS A  LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct: 1013 LTELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATASLTTSQKIVAERSVQKVTGTNSDLR 1110          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.300e-34
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 0
Query:    1 MTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            + ELKRVRAVAQYM+KELQMVPWT+T N+LK  G+ SS A  LL LSG GDPSG GEGFSFL R AEQAK +++LT+SQKI A+RSVQKVTGT+ DLR
Sbjct:  227 LAELKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATTSLTTSQKIVAERSVQKVTGTNSDLR 324          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM)

HSP 1 Score: 65.1 bits (157), Expect = 3.720e-10
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 0
Query:    3 ELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 98
            +L++   VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK          T+ + TS++  A  ++V  VTGT+ DLR
Sbjct:  851 KLEKDIQVARYVNEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLR 954          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: K0T8U3_THAOC (Bromo domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8U3_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 6.930e-10
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 0
Query:    3 ELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            +LKR +++A+++++ELQ+ PW ++ +F+          T  ++L+G GDPSGRGE +SFL  +  +   SSA       A +  ++K+TGT  DLR
Sbjct:  887 DLKRKQSIAKFIYEELQLSPWNLSGDFIDVHKRAIRNQT--MKLTGIGDPSGRGEAYSFLREEGGRGSKSSAAVDG---ALNAQIKKITGTENDLR 977          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0
Query:   10 VAQYMHKELQMVPWTITANFLK-HRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            VAQ++H+EL + PW +T  FL  H+    ++ T +++L+G GDPSG GEGFSFL R+ +   + S        A +  V+K+TGT+ DLR
Sbjct:    4 VAQFIHQELLLAPWHLTGEFLDVHK---KAEGTGMMKLTGLGDPSGTGEGFSFL-REVDSKPSKSV----GNAAINAQVKKITGTNDDLR 85          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: M4BEB5_HYAAE (Bromo domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEB5_HYAAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.300e-9
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   10 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTS-----SALTSSQKIAAD-----RSVQKVTGTSGDLR 98
            VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK       SA T+  KI+A+     ++V  VTGT+ DLR
Sbjct:  873 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDSAPTAESKISAETAAVQKAVAAVTGTTADLR 969          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A067DXS5_CITSI (DUF3591 domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DXS5_CITSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.590e-9
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 0
Query:    9 AVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            A A ++ +ELQ+ PW +++NF+             L ++G GDPSGRG GFS++ R A +A  SSA+   +K+AA+R    VTGT  DLR
Sbjct:  120 AAASHIERELQITPWNLSSNFVACTNQDRENIE-RLEITGVGDPSGRGLGFSYV-RAAPKASVSSAMVK-KKVAANRGGSNVTGTDADLR 206          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A6G0SI53_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SI53_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.750e-9
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0
Query:   10 VAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 98
            VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK          T+ +  S++  A  ++V  VTGT+ DLR
Sbjct:  869 VARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAESAAVQKAVAAVTGTTADLR 965          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 63.2 bits (152), Expect = 1.760e-9
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    4 LKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR 98
            L++   VAQ++ +ELQ+ PW +T  F+     G  + T +++L+G GDPSG GEGFSFL R+A+   + S        A +  ++K+TGT  DLR
Sbjct:  794 LRQKYEVAQFIFEELQLAPWHLTVEFIDVHKKG--EGTGMMKLTGLGDPSGMGEGFSFL-READSKPSKSV----GNAALNSQIKKITGTENDLR 881          
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Match: A0A484E5A4_BRELC (Bromo domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5A4_BRELC)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-9
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    3 ELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDGDPSGRGEGFSFLLRQAEQAK----------TSSALTSSQKIAADRSVQKVTGTSGDLR 98
            +L++   VA+Y++++LQ+ PW +T N+++    G      +L+L G GDP+GRGEGFSF+     +AK          T+ +  S++  A  ++V  VTGT+ DLR
Sbjct:  842 KLEKDIQVARYINEQLQLTPWNLTNNYVECHLQGKGSG--MLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDVAPTAESKISAETAAVQKAVAAVTGTTADLR 945          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75317.15214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW7_ECTSI7.100e-3573.47Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE3.300e-3472.45Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
H3GM70_PHYRM3.720e-1036.79Bromo domain-containing protein n=1 Tax=Phytophtho... [more]
K0T8U3_THAOC6.930e-1036.46Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2VAC4_9STRA1.040e-942.22Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
M4BEB5_HYAAE1.300e-940.40Bromo domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A067DXS5_CITSI1.590e-942.22DUF3591 domain-containing protein (Fragment) n=1 T... [more]
A0A6G0SI53_9STRA1.750e-937.37Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A1Z5JFQ5_FISSO1.760e-940.00Transcription initiation factor TFIID subunit 1 n=... [more]
A0A484E5A4_BRELC1.770e-935.85Bromo domain-containing protein n=1 Tax=Bremia lac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 10..94
e-value: 9.2E-13
score: 47.6
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 9..98
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1coord: 9..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75317contigH-elongata_contig75317:396..1285 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75317.15214.1mRNA_H-elongata_contig75317.15214.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig75317 396..1297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig75317.15214.1 ID=prot_H-elongata_contig75317.15214.1|Name=mRNA_H-elongata_contig75317.15214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MTELKRVRAVAQYMHKELQMVPWTITANFLKHRGMGSSQATCLLRLSGDG
DPSGRGEGFSFLLRQAEQAKTSSALTSSQKIAADRSVQKVTGTSGDLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591
IPR040240TAF1