prot_H-elongata_contig74905.15170.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74905.15170.1
Unique Nameprot_H-elongata_contig74905.15170.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-12
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 39
            LGL S+GLAHLLE +C F  DKKHQLSDWR RPLP DML
Sbjct:  422 LGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADML 460          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A5C3QJ95_9AGAR (HRDC domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QJ95_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 8.700e-11
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 40
            L    +GLAHLLE+YC F  DKKHQLSDWR RPLP DML+
Sbjct:  464 LDFPRHGLAHLLEMYCDFVPDKKHQLSDWRIRPLPEDMLE 503          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A6A4IAY6_9AGAR (HRDC domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4IAY6_9AGAR)

HSP 1 Score: 62.0 bits (149), Expect = 4.160e-10
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 39
            LG   +GLAHLLE+YC FT DK++QL+DWR RPLP +ML
Sbjct:  351 LGFPRHGLAHLLEMYCDFTPDKRYQLADWRIRPLPEEML 389          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A0C3AWU5_PILCF (HRDC domain-containing protein n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3AWU5_PILCF)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-10
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 39
            L    +GLAHLLE YC FTADK++QL+DWR RPLP +ML
Sbjct:  346 LEFSKHGLAHLLEAYCDFTADKRYQLADWRIRPLPEEML 384          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: E1ZEK3_CHLVA (HRDC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZEK3_CHLVA)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 39
            LG++ +GLAHLL+ YCGF ADK+ QL+DWR RPL  +ML
Sbjct:  357 LGMRGHGLAHLLDFYCGFKADKRFQLADWRVRPLTPEML 395          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 40
            L L S GLA+ L+ +CGF ADKKHQL DWR RPLP  MLK
Sbjct:  171 LDLPSRGLAYALKEFCGFEADKKHQLGDWRVRPLPPAMLK 210          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A078A2V7_STYLE (Exosome component 10 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A2V7_STYLE)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    6 YGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 40
            YGLA LL+ YCG  ADKK+QL+DWR RPLP +MLK
Sbjct:  407 YGLAFLLQSYCGVIADKKYQLADWRQRPLPEEMLK 441          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A7S1B8E6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.330e-8
Identity = 27/38 (71.05%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDM 38
            L L S GLAHLL    GF ADKKHQL DWR RPLP DM
Sbjct:  208 LRLPSAGLAHLLARSAGFAADKKHQLGDWRRRPLPEDM 245          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A250XL59_9CHLO (HRDC domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XL59_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 39
            L L S+ LA LLE +CGF ADK++QL+DWR RPL  +ML
Sbjct:  341 LSLSSFSLAFLLEHFCGFKADKRYQLADWRVRPLSSEML 379          
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A7S1ZWU0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWU0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = 0
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDM 38
            L   S GLA+LL  Y G  ADKKHQLSDWR RPLP DM
Sbjct:  243 LKFPSAGLAYLLSKYAGIIADKKHQLSDWRQRPLPEDM 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI2.800e-1276.92HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A5C3QJ95_9AGAR8.700e-1170.00HRDC domain-containing protein n=1 Tax=Pterula gra... [more]
A0A6A4IAY6_9AGAR4.160e-1066.67HRDC domain-containing protein n=1 Tax=Gymnopus an... [more]
A0A0C3AWU5_PILCF7.770e-1066.67HRDC domain-containing protein n=1 Tax=Piloderma c... [more]
E1ZEK3_CHLVA1.450e-964.10HRDC domain-containing protein n=1 Tax=Chlorella v... [more]
A0A836CIH7_9STRA5.090e-967.50Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A078A2V7_STYLE1.300e-871.43Exosome component 10 n=1 Tax=Stylonychia lemnae Ta... [more]
A0A7S1B8E6_9STRA5.330e-871.05Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A250XL59_9CHLO1.160e-761.54HRDC domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A7S1ZWU0_9STRA1.160e-768.42Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.500coord: 1..40
e-value: 2.9E-14
score: 54.8
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR12124:SF47EXOSOME COMPONENT 10coord: 1..40
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 4..39
e-value: 8.8E-7
score: 28.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74905contigH-elongata_contig74905:2943..3065 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74905.15170.1mRNA_H-elongata_contig74905.15170.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74905 2943..3065 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74905.15170.1 ID=prot_H-elongata_contig74905.15170.1|Name=mRNA_H-elongata_contig74905.15170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf