prot_H-elongata_contig74741.15153.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74741.15153.1
Unique Nameprot_H-elongata_contig74741.15153.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
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BLAST of mRNA_H-elongata_contig74741.15153.1 vs. uniprot
Match: D7FSG2_ECTSI (WD-repeat protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.370e-37
Identity = 91/168 (54.17%), Postives = 101/168 (60.12%), Query Frame = 0 
Query:    1 SSQVFFPNDKSGDVLVFPLHSVDGKSKGQLRAHFDPVQCCAYRSRTQELVTCGADGLTLLWSA--PTTADRAQRPSRASYLA--LRAVHGSSLGLLGRDDGEDQDTWSSGDDE-----------ERRRGVGHAPTGSGAGANNASPNTEGERDRGGGFVPPILMQGRR 153
            S  VFFPNDKSGDVLVFPLH+ DG+ KG+LR HFDPVQCCAYR RTQE+VTCGADGL LLWSA  P  A      SRASYL   L A  G +   LG    EDQD WSS DDE           +   GVG++   SG G + +          GG FVP IL Q RR
Sbjct:  405 SETVFFPNDKSGDVLVFPLHTPDGRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWSAAGPPWA------SRASYLPPPLAAGAGGTKRRLGEST-EDQDMWSS-DDEGGDGSRTSPAFDSLEGVGNSTISSGTGRSGSRRGGRSPGGSGGAFVPRILTQPRR 564
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74741.15153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSG2_ECTSI1.370e-3754.17WD-repeat protein, putative n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 23..62
e-value: 0.0029
score: 26.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..64
e-value: 3.2E-6
score: 28.3
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 10..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74741contigH-elongata_contig74741:44..2146 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74741.15153.1mRNA_H-elongata_contig74741.15153.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74741 44..2146 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74741.15153.1 ID=prot_H-elongata_contig74741.15153.1|Name=mRNA_H-elongata_contig74741.15153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
SSQVFFPNDKSGDVLVFPLHSVDGKSKGQLRAHFDPVQCCAYRSRTQELV
TCGADGLTLLWSAPTTADRAQRPSRASYLALRAVHGSSLGLLGRDDGEDQ
DTWSSGDDEERRRGVGHAPTGSGAGANNASPNTEGERDRGGGFVPPILMQ
GRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf