prot_H-elongata_contig74626.15144.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig74626.15144.1
Unique Name	prot_H-elongata_contig74626.15144.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	147

Homology

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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.530e-34
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 0

Query:   19 PPTPDDVPVDTKGLARKLTCSIVSVVFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW 146
            PP  D     T GLARKLTCS +S+V    +LIL +QV L L+AV  WG D+++ MI+LEQ NL KL + KA++V+E+F R+EE  LQ Q FA QA+L VPETM VD+Y+ SY GL Q  TT++HSVW
Sbjct:   10 PPVVDGNSKRTTGLARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKLVAAKAEFVSEHFGRVEESTLQLQAFAGQAILAVPETMTVDSYLTSYSGLLQSDTTFDHSVW 137

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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.690e-25
Identity = 55/103 (53.40%), Postives = 76/103 (73.79%), Query Frame = 0

Query:   44 VFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW 146
            V  G ++IL +QV L L+AV  WG D+++ M+E+E+ NL KLA  KA++V+E F R+EE +LQ Q FA QA+L VPETM VD+Y+ SY GL Q  TT+++SVW
Sbjct:   31 VAAGTVIILLIQVVLTLTAVDDWGGDTREAMVEVEEANLLKLAEAKAEFVSEQFGRVEESILQLQTFAGQAVLAVPETMTVDSYMTSYSGLLQSDTTFDNSVW 133

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BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Match: A0A6H5KWB6_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWB6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.770e-20
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 0

Query:   22 PDDVPVDTK-GLARKLTCSIVSVVFTGVLLILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARLEEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTT-WEHSVW 146
            P   P   K GLA+KL  +++     G+  IL L V L+L+ VP WG  +K+ MIE E +N+ +LA  KA++  E +AR++E +L  Q   EQ LL  PET+VVD+YV SY GL+Q +   W HS W
Sbjct:    5 PSTAPAGEKVGLAKKLANAVLLSTGIGLCSILALYVALMLNDVPEWGAMTKEVMIETEMKNINRLALAKAEHTGEIYARVKESLLLLQAVGEQILLTEPETVVVDDYVKSYSGLQQQAVDDWNHSTW 131

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot

BLAST of mRNA_H-elongata_contig74626.15144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FWV2_ECTSI	6.530e-34	55.47	VWFA domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5KL16_9PHAE	2.690e-25	53.40	VWFA domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5KWB6_9PHAE	4.770e-20	44.09	VWFA domain-containing protein n=2 Tax=Ectocarpus ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..63
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..39
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 64..146
None	No IPR available	TMHMM	TMhelix		coord: 40..62

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig74626	contig	H-elongata_contig74626:1631..2071 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig74626.15144.1	mRNA_H-elongata_contig74626.15144.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig74626 1430..2299 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig74626.15144.1 ID=prot_H-elongata_contig74626.15144.1|Name=mRNA_H-elongata_contig74626.15144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MVSLRAAPVFNASPPPIEPPTPDDVPVDTKGLARKLTCSIVSVVFTGVLL
ILFLQVGLILSAVPSWGDDSKDRMIELEQENLKKLASGKADYVTENFARL
EEGVLQAQGFAEQALLEVPETMVVDNYVASYPGLEQVSTTWEHSVW*