prot_H-elongata_contig73532.15044.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.040e-18 Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query: 5 GAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
GAIKNCFIRGSVVRYIQIPS+DVDTELLQDACRKE QGK
Sbjct: 55 GAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 9.930e-15 Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0
Query: 5 GAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQG 43
GA+K CFIRGS VRYIQIP+S+VDTELLQDACRKE G
Sbjct: 55 GALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENASG 93
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A8C4RE61_ERPCA (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4RE61_ERPCA) HSP 1 Score: 68.6 bits (166), Expect = 3.350e-14 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 1 SIAQGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
S+ Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE VQ K
Sbjct: 31 SVDQLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAVQQK 74
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A2I3T8S5_PANTR (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated n=15 Tax=Euarchontoglires TaxID=314146 RepID=A0A2I3T8S5_PANTR) HSP 1 Score: 67.4 bits (163), Expect = 9.590e-14 Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 1 SIAQGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
S+ Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct: 31 SVDQLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQK 74
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A7SNR1_NEMVE (U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=Hexacorallia TaxID=6102 RepID=A7SNR1_NEMVE) HSP 1 Score: 66.6 bits (161), Expect = 3.210e-13 Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 0
Query: 6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
++KNCFIRGSVVRY+Q+PS +VDT+LLQDA RKE +Q K
Sbjct: 56 SVKNCFIRGSVVRYVQLPSEEVDTQLLQDATRKEAMQNK 94
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A7L2NNT6_PYCJO (LSM2 protein (Fragment) n=1 Tax=Pycnonotus jocosus TaxID=182897 RepID=A0A7L2NNT6_PYCJO) HSP 1 Score: 65.5 bits (158), Expect = 4.110e-13 Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 0
Query: 4 QGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct: 22 QLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQK 62
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A8C7Y104_9TELE (Smx5 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7Y104_9TELE) HSP 1 Score: 65.5 bits (158), Expect = 4.210e-13 Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 0
Query: 4 QGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct: 23 QLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQK 63
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 4.310e-13 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0
Query: 6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE K
Sbjct: 67 ALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 105
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: Q5BL46_XENTR (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Euteleostomi TaxID=117571 RepID=Q5BL46_XENTR) HSP 1 Score: 66.2 bits (160), Expect = 4.550e-13 Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 0
Query: 6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE VQ K
Sbjct: 56 SVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAVQQK 94
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: UPI001884BD19 (LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm2 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=UPI001884BD19) HSP 1 Score: 66.2 bits (160), Expect = 5.820e-13 Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 0
Query: 6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
++KNCFIRGSVVRY+Q+P+ ++DT+LLQDA RKE QGK
Sbjct: 66 SVKNCFIRGSVVRYVQLPADEIDTQLLQDATRKEAQQGK 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig73532.15044.1 ID=prot_H-elongata_contig73532.15044.1|Name=mRNA_H-elongata_contig73532.15044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bpback to top |