prot_H-elongata_contig73354.15027.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73354.15027.1
Unique Nameprot_H-elongata_contig73354.15027.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length158
Homology
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.020e-64
Identity = 107/159 (67.30%), Postives = 125/159 (78.62%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY--FKAPEPPPPVYTACHAVHGKIL 157
            MNGKRN WEAVN+LPFIDAYRL+AAV E CP TAL   EAERNT G+V+EY+HD  ++R EMSCNPEIGLADI  CTA+ R+VPFSIEPGECF+PELP DA+IP+AGFPSLHVL+V SVEE K+P+N FG+ SRY         PPV     A+ GK+L
Sbjct:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQEAERNTRGQVVEYFHDAFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYETLVLELKRPPVLPPASALSGKVL 159          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.780e-37
Identity = 75/135 (55.56%), Postives = 88/135 (65.19%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WEAVNLLPFIDA RL AAV E CP   L  +E +RNT G VLEY +        +SCNPEIGL+DIR C +  + +P+SIE    F   LP  + IP AGFPSL+VL +   E   I +NVFGS SRY
Sbjct:  547 MNGKRNPWEAVNLLPFIDASRLFAAVHERCPVQLLTPEERKRNTYGAVLEYTYSEHATGTVVSCNPEIGLSDIRQCVSEEKELPWSIESHTSFTSALPLGSTIPLAGFPSLNVLPIEQAEAKPIKLNVFGSESRY 681          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S2UF08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF08_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.510e-30
Identity = 67/135 (49.63%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WE VN+L FID   L+  VA  CP   L  DE  RN+LGKVL Y  D   N    SCN +IGL DI  C +   V       G  FKPEL     IP  GFPSL VL + +VE   I +NVFG PS+Y
Sbjct:   78 MNGKRNPWEGVNILSFIDVNLLRETVAAQCPDKVLTPDERSRNSLGKVLCYTFDLTNNDTVPSCNKDIGLIDISKCHSRVDVFEEPKRDGVSFKPELMPGTQIPYPGFPSLLVLPIENVELIGIGLNVFGHPSKY 212          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.780e-29
Identity = 63/135 (46.67%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WE VN+LPFID   LK  +A+HCP +AL  DE  RN +GKV  Y +D  +N    SCN +IGL +I  C +   ++         FKPEL     IP  GFPSL+VL +  VE     +N FG PS+Y
Sbjct:  567 MNGKRNPWEGVNILPFIDGNLLKQTIAKHCPDSALTADERHRNRVGKVYCYTYDAAVNDTVPSCNRDIGLPNIVKCNSRVDIIENLSVSNISFKPELVPGTKIPYPGFPSLNVLPIEHVELRNAGVNCFGFPSKY 701          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK)

HSP 1 Score: 119 bits (298), Expect = 3.280e-28
Identity = 65/137 (47.45%), Postives = 78/137 (56.93%), Query Frame = 0
Query:    2 NGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVP---FSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            NGKRN WEAVNLLPFIDA R++AAVA HCP   L ++E  RN +G VL Y+HDP       SCNPEIGL D+  C ++   +P   F           L     +P  G+PSL  L  R V    I +N FGS SRY
Sbjct:  425 NGKRNPWEAVNLLPFIDADRMRAAVAAHCPDRLLTEEERRRNRIGPVLLYHHDPANTATIPSCNPEIGLPDLLRCASSIVELPTNAFEDVAEGTLHSALRPGVTLPLPGYPSLATLPRRGVRAEAIGLNCFGSGSRY 561          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.310e-28
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WE VN+LPFID + LK++++++CP   L  DE  RN LGKV  Y  DP  N    S N +IGL DI+ C +   +   +      F+P L     IP  GFPSL+VL + S+E   + +N+FG PS+Y
Sbjct:  571 MNGKRNPWEGVNILPFIDVHLLKSSISKYCPDEVLTADERNRNRLGKVYLYTFDPASNDMVPSFNKDIGLPDIQKCNSRVDIFEENDSTDISFRPTLVPGTQIPYPGFPSLNVLPLVSIELIPVGLNIFGMPSKY 705          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S1UYY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYY6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.070e-27
Identity = 62/135 (45.93%), Postives = 75/135 (55.56%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WE VNLLPFID   LK  +A   P + L  DE +RN+ G V  Y HDP  N    S N  IGL DI+ C +    +        CFKPEL     +P  GFPS++VL + S E  K  +N FGS S+Y
Sbjct:   10 MNGKRNPWEGVNLLPFIDVKLLKQTIATQVPNSTLTNDERKRNSRGVVFMYEHDPTANETIPSPNTSIGLIDIQRCHSKIEEIDEPDRLDICFKPELVPGTKLPYPGFPSMNVLPIASFELTKTGLNCFGSASKY 144          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A482SU95_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU95_9ARCH)

HSP 1 Score: 117 bits (292), Expect = 2.080e-27
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            M+GK+N WEAV LL FID  +L  A    CP   L   E  RN  GK+L++ +DP +    +SCNPEIGL DI HC ++   + FS+ PG+ F  +L      P AG+PSL  L + S++     INVFG+ SRY
Sbjct:  575 MDGKKNPWEAVVLLSFIDEKQLVEAERVFCPVAKLTVTEYNRNQFGKLLQHVYDPNVTDTVLSCNPEIGLGDIHHCHSSLTELDFSLLPGKAFVSKLVEGTEYPIAGYPSLTCLPLASIDIVSQKINVFGTDSRY 709          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO)

HSP 1 Score: 114 bits (285), Expect = 1.850e-26
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGEC-FKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGK+N WE VNLLPFID   LK+ V + CP + L   E  RN++G +  Y HDP       S NP IGL DI  C +   V+ F   P    F+P+L S   +P  GFPSL+VL + S+   K  +N FG PS+Y
Sbjct:  551 MNGKKNPWEGVNLLPFIDIALLKSTVEKFCPDSKLSTAELVRNSMGTIYCYKHDPTSIETVTSPNPSIGLPDISVCHSTISVIEFDEGPSTSKFEPKLVSGTQLPYPGFPSLNVLPIASIALTKAGLNCFGVPSKY 686          
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC)

HSP 1 Score: 113 bits (283), Expect = 3.440e-26
Identity = 61/135 (45.19%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 135
            MNGKRN WE VN+LPFIDA RLK A+ ++CP   L  +E  RN +G+V  Y +D   N    SCN +IGL +I  C +    +  S E    F PEL     IP  GFPSL+VL +  VE     +N FG  S+Y
Sbjct:  619 MNGKRNPWEGVNILPFIDANRLKDAIKDNCPDRLLTAEERNRNRVGQVFCYSYDEACNDTIPSCNRDIGLPNIEKCHSRVITIDNSSESTVSFSPELIPGTKIPYPGFPSLNVLPIERVELRNAGLNCFGFASKY 753          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME4_ECTSI4.020e-6467.305\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonucl... [more]
A0A835Z4G8_9STRA5.780e-3755.56XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S2UF08_9STRA1.510e-3049.63Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2PSP2_9STRA6.780e-2946.67Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6V1PVC7_HETAK3.280e-2847.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4RC29_9STRA3.310e-2844.445'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
A0A7S1UYY6_9STRA1.070e-2745.93Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A482SU95_9ARCH2.080e-2744.44Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1Z5JKV0_FISSO1.850e-2644.855'-3' exoribonuclease 1 n=2 Tax=Fistulifera solari... [more]
K0STL9_THAOC3.440e-2645.195'-3' exoribonuclease 1 n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041412Xrn1, helical domainPFAMPF17846XRN_Mcoord: 1..46
e-value: 3.4E-7
score: 29.6
NoneNo IPR availableGENE3D3.30.110.100coord: 1..45
e-value: 4.2E-5
score: 26.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73354contigH-elongata_contig73354:414..2412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73354.15027.1mRNA_H-elongata_contig73354.15027.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73354 414..2412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73354.15027.1 ID=prot_H-elongata_contig73354.15027.1|Name=mRNA_H-elongata_contig73354.15027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLE
YYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSD
AVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRYFKAPEPPPPVYTACH
AVHGKIL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041412Xrn1_helical