prot_H-elongata_contig73351.15026.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73351.15026.1
Unique Nameprot_H-elongata_contig73351.15026.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
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BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.290e-38
Identity = 71/102 (69.61%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:    7 FRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRISVGDARTWLQSIPRVLMPSAICLDFTAESSVIGERPAFSAKAMGISSNASAKLRTAYCT 108
            FRII TT VA+RSCCCLPM VSKMPC F+S VP                TWLQS+PRVL PSAICLDFTA+SSV+GERPAFSA+AMG+SS ASAKLRTAYC+
Sbjct:    1 FRIIFTTWVANRSCCCLPMSVSKMPCFFISHVP----------------TWLQSMPRVLTPSAICLDFTADSSVMGERPAFSARAMGMSSKASAKLRTAYCS 86
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BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A0A9KNU7_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9KNU7_ARUDO)

HSP 1 Score: 63.2 bits (152), Expect = 3.520e-11
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 0 
Query:    3 TSSIFRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRISVGDARTWLQSIPRVLMPSAIC 71
            TSSIFRII TTCVAS+ CCCLP+RVSK  CSFMS VP                T LQS+P+  + S IC
Sbjct:    2 TSSIFRIIFTTCVASKICCCLPIRVSKTFCSFMSLVP----------------TSLQSMPQWGLFSLIC 54
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BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A0A9NBF5_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NBF5_ARUDO)

HSP 1 Score: 62.8 bits (151), Expect = 9.420e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    3 TSSIFRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQ 43
            TSSIFRII TTCVAS+ CCCLP+RVSK  CSFMS VP   Q
Sbjct:   28 TSSIFRIIFTTCVASKICCCLPIRVSKTFCSFMSLVPTSLQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
G3G4N4_9PHAE3.290e-3869.61T-complex protein 1 epsilon subunit (Fragment) n=2... [more]
A0A0A9KNU7_ARUDO3.520e-1155.07Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A0A9NBF5_ARUDO9.420e-1175.61Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.522

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73351contigH-elongata_contig73351:1786..2364 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73351.15026.1mRNA_H-elongata_contig73351.15026.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73351 1786..2364 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73351.15026.1 ID=prot_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MSTSSIFRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRIS
VGDARTWLQSIPRVLMPSAICLDFTAESSVIGERPAFSAKAMGISSNASA
KLRTAYCTARQE*
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