prot_H-elongata_contig7313.14990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7313.14990.1
Unique Nameprot_H-elongata_contig7313.14990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length209
Homology
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: D7FWN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN9_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.800e-64
Identity = 117/152 (76.97%), Postives = 132/152 (86.84%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAARQAALAKQIAAPRTATRTGPISNIGPQIPGRGA------IRALPPLP 146
            MV DP+TG  +AAS+LSDHMRIQL+DPKW+E+QARAAAKQKDTAL +GES+A SL SLARKRGDIFGSAEDEE+QLL ESNARKKRKE+VTRV+WDGNIATA AARQAAL KQI  PRTA RTGPISNIGPQ+ GRG       +++LPPLP
Sbjct:  440 MVIDPITGATVAASELSDHMRIQLMDPKWREEQARAAAKQKDTALAEGESIAASLKSLARKRGDIFGSAEDEEQQLLNESNARKKRKEEVTRVLWDGNIATATAARQAALQKQINTPRTAQRTGPISNIGPQVSGRGGGRGGAQMQSLPPLP 591          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S3UTY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY2_HETAK)

HSP 1 Score: 106 bits (264), Expect = 5.710e-26
Identity = 53/101 (52.48%), Postives = 78/101 (77.23%), Query Frame = 0
Query:    2 VTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATA 102
            + DP+TG+++  ++L + MRIQLLDPKW EQ  RAA +QKDT L  G+++A++L  ++RKRGDIFG+AE+E  QL+ E+  RK+R E+  RV+WDG+ +TA
Sbjct:   22 MVDPITGKEVPIAELPERMRIQLLDPKWLEQTRRAADRQKDTGLAAGDAIAENLRVMSRKRGDIFGTAEEEATQLMEEAKRRKRRDEE-NRVVWDGHSSTA 121          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S2Y1I0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1I0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.210e-22
Identity = 63/147 (42.86%), Postives = 86/147 (58.50%), Query Frame = 0
Query:    2 VTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAARQAALAKQIAAPRTATRTGPISNIGPQIP----GRGAIRALPP 144
            + DP+TGQ++  S++ + MRIQLLDPKW+EQ  RA  KQ+DT L  GE++A +L  +A+KRGDIFG+AE+E               ED  RV+WDG+ A+A AA++ A  K       AT      +IGP  P    G GA   + P
Sbjct:   34 MVDPITGQEVPISEIPERMRIQLLDPKWREQTQRAQDKQRDTGLAAGEAIASNLRKIAQKRGDIFGTAEEEXXXXXXXXXXXXXXXED-NRVIWDGHSASAAAAQEEARHKPAQPAPAATMGTKGPSIGPAAPNKPSGGGAYNPMQP 179          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: K8Z790_NANGC (Splicing factor 3A subunit 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z790_NANGC)

HSP 1 Score: 96.7 bits (239), Expect = 6.850e-20
Identity = 43/97 (44.33%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 97
            ++ DPVTG+++  +D+ +HMRIQ LDP+W+++Q RA  K+K++AL +G  +A ++ S A+KR DIFG++E+EE+Q+LA+    + R+E+  R++W G
Sbjct:   69 VMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 165          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.280e-19
Identity = 43/97 (44.33%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 97
            ++ DPVTG+++  +D+ +HMRIQ LDP+W+++Q RA  K+K++AL +G  +A ++ S A+KR DIFG++E+EE+Q+LA+    + R+E+  R++W G
Sbjct:  376 VMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 472          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: W7TP71_9STRA (SWAP/Surp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP71_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-19
Identity = 43/97 (44.33%), Postives = 74/97 (76.29%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 97
            ++ DPVTG+++  +D+ +HMRIQ LDP+W+++Q RA  K+K++AL +G  +A ++ S A+KR DIFG++E+EE+Q+LA+    + R+E+  R++W G
Sbjct:  405 VMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 501          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A433PZB8_9FUNG (Pre-mRNA splicing factor PRP21 like protein-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PZB8_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 9.750e-18
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 0
Query:    5 PVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDT-ALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG-----NIATADAARQAALAKQIAA-PRTATRTGPI-SNIGPQIPGR 136
            P  GQ +  S++++HMRI+LLDPKWKEQ+  A AK+KD+  L++G  +AK+L + +  R DIFG+ E E  + + E +   K+K D  +V+WDG     N+AT  AA+  ++ +QIAA  R+   TG   S IGP++P R
Sbjct:  471 PQCGQPIPVSEMAEHMRIELLDPKWKEQKIAADAKKKDSNLLMEGTDVAKNLKNFSGYRSDIFGTEEVEIGRKIGEIDEENKKKADREKVVWDGHTASINLATQRAAQGVSIDEQIAAIHRSKGLTGDDGSTIGPRVPSR 610          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S3LZ45_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ45_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.360e-17
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAED----EEKQLLAESNARKKRKEDV-TRVMWDGNIAT 101
            M+ DP++G+ +  S +S+HMRIQLLDP+W+EQQ R   KQ++T   +G S+A SL + ARKRGDIFG A           +AE   +++RK ++ ++V WDG+  T
Sbjct:   30 MMVDPISGKAVPVSQMSEHMRIQLLDPRWREQQQRFVDKQRETGYAEGGSIADSLKNFARKRGDIFGQAATGSGPNTAAAIAELEEQERRKNEIQSQVQWDGHYGT 135          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A2G5DGD2_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DGD2_AQUCA)

HSP 1 Score: 87.4 bits (215), Expect = 2.040e-16
Identity = 53/151 (35.10%), Postives = 87/151 (57.62%), Query Frame = 0
Query:    2 VTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAARQAALAK------QIAAPRTATRTGPISNIGPQIPGRGAIRALPPLP 146
            V  P+TG+ +  S++++HMRI L+DPK+KEQ+ R  AK ++T L   + +++++  LAR R DIFG+ E+E    + ++   KK++E   +V+WDG+  +       A+++      QI A     R  P +   P  PG  +IR LPP P
Sbjct:  424 VVSPITGELIPISEMAEHMRISLIDPKYKEQKERMMAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAV-KAEIEKKKEEQPKQVIWDGHTGSIGRTANQAMSQNISGEEQIDAASNEARALPGAAAPPPRPGMPSIRPLPPPP 573          
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A409VC78_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409VC78_9AGAR)

HSP 1 Score: 87.0 bits (214), Expect = 2.720e-16
Identity = 67/161 (41.61%), Postives = 93/161 (57.76%), Query Frame = 0
Query:    1 MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTA-LVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIA----TADA-ARQAALAKQIAAPRTATRTGP--ISNIGPQIPGRGA---IRALPPLPAGNP 150
            M T  + GQ++A  +L +HMRI+LLDPKWKEQ+    A++   + L  G ++  SL +LAR R DIFG+  DEE++   E+  R+KRKE   +V+WDG+ A    T D  +R     +QIAA   A   GP  ++ IGP I    A   +  LPP PA  P
Sbjct:  386 MTTCTICGQQIAVDELQEHMRIELLDPKWKEQRDNLEARKAQASELQRGANVVTSLQNLARTRVDIFGTETDEERRKKEEALEREKRKER-EKVVWDGHTASKLNTLDKFSRNVNTDEQIAAIHRAKGLGPQEVNAIGPGIGPAAAPPPLTTLPPAPASLP 545          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWN9_ECTSI2.800e-6476.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UTY2_HETAK5.710e-2652.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y1I0_9STRA2.210e-2242.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K8Z790_NANGC6.850e-2044.33Splicing factor 3A subunit 1 n=1 Tax=Nannochlorops... [more]
A0A4D9CLT9_9STRA1.280e-1944.33Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TP71_9STRA1.300e-1944.33SWAP/Surp n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A433PZB8_9FUNG9.750e-1842.86Pre-mRNA splicing factor PRP21 like protein-domain... [more]
A0A7S3LZ45_9STRA1.360e-1744.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2G5DGD2_AQUCA2.040e-1635.10Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A409VC78_9AGAR2.720e-1641.61Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 164..181
score: 41.11
coord: 146..162
score: 40.0
coord: 113..134
score: 27.27
coord: 187..208
score: 32.31
NoneNo IPR availablePANTHERPTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDcoord: 1..174
NoneNo IPR availablePANTHERPTHR15316:SF1SPLICING FACTOR 3A SUBUNIT 1coord: 1..174
IPR022030Splicing factor 3A subunit 1PFAMPF12230PRP21_like_Pcoord: 5..61
e-value: 8.4E-12
score: 45.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7313contigH-elongata_contig7313:6877..7880 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7313.14990.1mRNA_H-elongata_contig7313.14990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7313 6877..8077 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7313.14990.1 ID=prot_H-elongata_contig7313.14990.1|Name=mRNA_H-elongata_contig7313.14990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGES
MAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIA
TADAARQAALAKQIAAPRTATRTGPISNIGPQIPGRGAIRALPPLPAGNP
PPPPPLPIDNPPPPPPPPGNPPPPPPPPPEEDMDEDDDDIPPSPPPPPPG
GMPPPPPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022030SF3A1