prot_H-elongata_contig72868.14968.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72868.14968.1
Unique Nameprot_H-elongata_contig72868.14968.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.450e-52
Identity = 81/105 (77.14%), Postives = 93/105 (88.57%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWVS 105
            M+PKE+K +RKLM++C+RC ++E A+SG CVYRNN+I T GNKLDIVQTDV+DDPTLQRSKNAICEKCNYNEAVFFQADE  +  Q LSLIFVCTNR CGHKWVS
Sbjct:  134 MHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAK-SQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.230e-32
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            ++PKE++  R L +AC+RC ++E A   C VY NN++ T   KLDIV  DV++DPTLQRSK+ IC++CNY+EAVFFQAD+  +   L SLIFVCT+  CG KWV
Sbjct:   11 LHPKENRTTRTLFYACNRCAYREEAGQSC-VYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSL-SLIFVCTH--CGKKWV 110          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC)

HSP 1 Score: 99.4 bits (246), Expect = 7.530e-25
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 103
            +YPKE K ++ L+FAC  C ++E A+S C VYRN +   VG +  I+Q DV +DPTL R+K+  C KC++ EAVFFQA    R E+ ++L FVC N  CG++W
Sbjct:   14 LYPKEDKQKKILLFACRNCDYEEVADSFC-VYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASS--RGEEGMTLFFVCCNPACGYRW 112          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES)

HSP 1 Score: 102 bits (254), Expect = 1.130e-24
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 103
            +YPKE + ++ L++AC  C  QE A++ C VYRN I  +VG +  ++Q DV  DPTL R+KN  C KCN+ EAVFFQA    R E+ ++L FVC N  CGH+W
Sbjct:  140 LYPKEDREQKILLYACRNCDHQEVADNNC-VYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQA--AARGEEGMTLFFVCCNPSCGHRW 238          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A162QY43_MUCCL (DNA-directed RNA polymerase subunit n=5 Tax=Mucor TaxID=4830 RepID=A0A162QY43_MUCCL)

HSP 1 Score: 98.2 bits (243), Expect = 2.150e-24
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            +YP+E K ERKLMFAC  C +QE AE+  CVYR+ I+     +  ++  D+  DPTL R+ N  C KC + EAVFFQ+   RR +  ++L +VC NRGCGH+WV
Sbjct:   14 LYPREDKNERKLMFACRNCEYQEQAEN-VCVYRHEIVHAPSEQT-MMLADLSTDPTLPRA-NVQCAKCGHPEAVFFQSSS-RRADAKMTLFYVCGNRGCGHRWV 113          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A199V8C1_ANACO (DNA-directed RNA polymerase subunit n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199V8C1_ANACO)

HSP 1 Score: 97.4 bits (241), Expect = 4.440e-24
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 103
            +YPKE +  + L+FAC  C  QE +++ C VYRN ++ +VG +  I+Q DV  DPTL R+K   C  C + EAVFFQA    R E+ ++L FVC N  CGH+W
Sbjct:   14 LYPKEDRERKILLFACRNCEHQEVSDNNC-VYRNEVLHSVGERTQILQ-DVASDPTLPRTKTVRCAACGHPEAVFFQAPS--RGEEGMTLFFVCCNPNCGHRW 112          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A7M7GJD4_APIME (DNA-directed RNA polymerase subunit n=71 Tax=Pterygota TaxID=7496 RepID=A0A7M7GJD4_APIME)

HSP 1 Score: 97.4 bits (241), Expect = 6.740e-24
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            +YPKE K  + LM+AC  C F++ A+S C +Y N I+  +     IV  DVI DPTL R+++  C KCN+ EAVFFQA + RR E+ + L +VCTN+ C H+W 
Sbjct:   29 LYPKEDKENKVLMYACRNCDFKQLADSNC-IYVNKIMHEIDELTHIV-ADVISDPTLPRTEDHPCPKCNHREAVFFQA-QTRRAEEEMRLYYVCTNQHCCHRWT 129          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 8.690e-24
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            +YP+E K  RKL+FAC  C F+E A++ C VYR+ I+     +  +V TD+  DPTL R+  A C +C Y EAVFFQ+   RR +  ++L +VC NR CGH+WV
Sbjct:   14 LYPREDKTNRKLLFACRNCHFEEDADNNC-VYRHEIVHAPSEQT-MVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQS-AARRADTKMTLFYVCCNRACGHRWV 113          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: UPI001D0951AA (DNA-directed RNA polymerase II subunit RPB9 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0951AA)

HSP 1 Score: 96.7 bits (239), Expect = 1.430e-23
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            +YPKE K  + L++AC  C +++ A+S C +Y N I+  +     IV  DV+ DPTL RS++  C KCNY EAVFFQA + RR E+ + L +VCTN  C H+W 
Sbjct:   31 LYPKEDKENKVLLYACRNCDYKQLADSNC-IYVNKIMHEIDELTHIVP-DVVSDPTLPRSEDHHCPKCNYREAVFFQA-QTRRAEEEMRLYYVCTNPQCTHRWT 131          
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A4Y7LS89_9CRUS (DNA-directed RNA polymerase subunit n=1 Tax=Eubosmina coregoni TaxID=186181 RepID=A0A4Y7LS89_9CRUS)

HSP 1 Score: 96.3 bits (238), Expect = 1.720e-23
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    1 MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 104
            +YPKESK +R L++AC  C +++ A++ C VY N I+  +     IV  DVI DPTL R+++  C KCN++EAVFFQ+   RR E+ + L +VCTN  C H+W 
Sbjct:   25 LYPKESKEDRTLLYACRNCDYKQLADNHC-VYVNKIMHEIDELTQIV-ADVISDPTLPRTEDHPCPKCNHSEAVFFQSQS-RRAEEEMRLYYVCTNGNCTHRWT 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI1.450e-5277.14TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA1.230e-3255.77DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A8B7CCB1_PHODC7.530e-2548.54DNA-directed RNA polymerase subunit n=3 Tax=Arecac... [more]
A0A843UFX2_COLES1.130e-2449.51TFIIS-type domain-containing protein n=1 Tax=Coloc... [more]
A0A162QY43_MUCCL2.150e-2449.04DNA-directed RNA polymerase subunit n=5 Tax=Mucor ... [more]
A0A199V8C1_ANACO4.440e-2446.60DNA-directed RNA polymerase subunit n=1 Tax=Ananas... [more]
A0A7M7GJD4_APIME6.740e-2447.12DNA-directed RNA polymerase subunit n=71 Tax=Ptery... [more]
A0A8H7UCI9_9FUNG8.690e-2447.12DNA-directed RNA polymerase subunit n=2 Tax=Umbelo... [more]
UPI001D0951AA1.430e-2346.15DNA-directed RNA polymerase II subunit RPB9 n=1 Ta... [more]
A0A4Y7LS89_9CRUS1.720e-2346.15DNA-directed RNA polymerase subunit n=1 Tax=Eubosm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 63..105
e-value: 0.006
score: 18.0
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 64..103
e-value: 1.3E-4
score: 21.7
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 61..104
score: 9.205
NoneNo IPR availableGENE3D2.20.25.10coord: 1..34
e-value: 9.1E-10
score: 39.7
NoneNo IPR availableGENE3D2.20.25.10coord: 35..105
e-value: 1.1E-19
score: 71.7
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 1..104
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..104
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 43..103
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72868contigH-elongata_contig72868:950..1902 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72868.14968.1mRNA_H-elongata_contig72868.14968.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72868 950..1908 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72868.14968.1 ID=prot_H-elongata_contig72868.14968.1|Name=mRNA_H-elongata_contig72868.14968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTD
VIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCG
HKWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS