prot_H-elongata_contig72831.14963.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72831.14963.1
Unique Nameprot_H-elongata_contig72831.14963.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
[Close]
BLAST of mRNA_H-elongata_contig72831.14963.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.700e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0 
Query:    1 ECLCQKFVVFGDEIDFRAHMLQMHPNQPIDRKIQVMY 37
            ECL +KFVVF  EID   H LQMHPN+PI R+IQV +
Sbjct:  244 ECLQKKFVVFDSEIDLAGHTLQMHPNKPIKRQIQVNF 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72831.14963.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE2.700e-764.86RING-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72831contigH-elongata_contig72831:1197..1313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72831.14963.1mRNA_H-elongata_contig72831.14963.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72831 1197..1313 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72831.14963.1 ID=prot_H-elongata_contig72831.14963.1|Name=mRNA_H-elongata_contig72831.14963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
ECLCQKFVVFGDEIDFRAHMLQMHPNQPIDRKIQVMYQ*
back to top