prot_H-elongata_contig72782.14954.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig72782.14954.1
Unique Name	prot_H-elongata_contig72782.14954.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	96

Homology

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.610e-54
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0

Query:    1 GKFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            GKFLEGS+TIT+GFTHAIS+GNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  470 GKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.000e-47
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0

Query:    4 LEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            L GS  IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  445 LAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S3DSN5_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSN5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.640e-46
Identity = 72/87 (82.76%), Postives = 83/87 (95.40%), Query Frame = 0

Query:    9 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            TITNG  +AI+TGNWVLKRFK+DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   51 TITNGMINAIATGNWVLKRFKMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 137

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 155 bits (393), Expect = 4.850e-46
Identity = 73/86 (84.88%), Postives = 81/86 (94.19%), Query Frame = 0

Query:   10 ITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            ITNG  +AISTGNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   74 ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S1V6C3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.810e-45
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 0

Query:    9 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            TIT G   AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   19 TITYGMVTAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 105

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A059LAC5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAC5_9CHLO)

HSP 1 Score: 151 bits (381), Expect = 6.040e-45
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 0

Query:    7 SSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            S T+T G  HA+S+GNW ++RF+++R+GVTQVLSRLSFIS+LGMMTRV SQF+K RKVSGPRALQPSQWGM+CPADTPEGESCGLVKNL
Sbjct:   67 SDTLTYGLEHALSSGNWNIRRFRMERRGVTQVLSRLSFISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMVCPADTPEGESCGLVKNL 155

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S0U407_HEMAN (DNA-directed RNA polymerase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U407_HEMAN)

HSP 1 Score: 150 bits (378), Expect = 8.260e-45
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 0

Query:    2 KFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            K+L  +S IT+G  +AISTGNW L+RF ++RQGVTQVLSRLSFI++LGM+TRV SQF+K RKVSGPR+LQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:   21 KYLP-ASKITSGLVNAISTGNWNLRRFGMERQGVTQVLSRLSFIAALGMITRVQSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGESCGLVKNL 113

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.210e-44
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 0

Query:    7 SSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            S TIT G   AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  145 SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.370e-44
Identity = 71/87 (81.61%), Postives = 83/87 (95.40%), Query Frame = 0

Query:    9 TITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            TITNG  +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  165 TITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251

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BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 160 bits (404), Expect = 1.330e-43
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 0

Query:    2 KFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 95
            KF+ G  TIT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  193 KFIRGD-TITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot

BLAST of mRNA_H-elongata_contig72782.14954.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JAF8_9PHAE	1.610e-54	96.84	DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp....	[more]
A0A835Z565_9STRA	1.000e-47	90.22	DNA-directed RNA polymerase subunit beta n=1 Tax=T...	[more]
A0A7S3DSN5_9STRA	1.640e-46	82.76	DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp...	[more]
A0A822DRV6_9NEOB	4.850e-46	84.88	DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi...	[more]
A0A7S1V6C3_9STRA	4.810e-45	82.76	DNA-directed RNA polymerase (Fragment) n=1 Tax=Gra...	[more]
A0A059LAC5_9CHLO	6.040e-45	78.65	DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel...	[more]
A0A7S0U407_HEMAN	8.260e-45	77.66	DNA-directed RNA polymerase (Fragment) n=1 Tax=Hem...	[more]
A0A7S2WKY6_9STRA	1.210e-44	82.02	DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc...	[more]
A0A7S3PBU7_9STRA	3.370e-44	81.61	DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp...	[more]
A0A482SPL4_9ARCH	1.330e-43	80.85	DNA-directed RNA polymerase subunit beta n=1 Tax=a...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007645	RNA polymerase Rpb2, domain 3	PFAM	PF04565	RNA_pol_Rpb2_3	coord: 37..95 e-value: 5.4E-20 score: 71.3
None	No IPR available	GENE3D	3.90.1100.10		coord: 3..96 e-value: 1.5E-21 score: 78.8
None	No IPR available	PANTHER	PTHR20856:SF8	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2	coord: 28..95
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 7..95
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 28..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig72782	contig	H-elongata_contig72782:1262..3108 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig72782.14954.1	mRNA_H-elongata_contig72782.14954.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig72782 1262..3108 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig72782.14954.1 ID=prot_H-elongata_contig72782.14954.1|Name=mRNA_H-elongata_contig72782.14954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
GKFLEGSSTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGM
MTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007645	RNA_pol_Rpb2_3
IPR015712	DNA-dir_RNA_pol_su2