prot_H-elongata_contig72752.14949.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72752.14949.1
Unique Nameprot_H-elongata_contig72752.14949.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 4.010e-39
Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 0
Query:    1 LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRLMP 86
            L+AEE+WRYCC RR DFP MFAVYRHFR + FTV  GHKYGAH+VLYEG PDE HSRYCVHV G   GG  GDSW H+KTMTRLMP
Sbjct:  190 LSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTG---GGGRGDSWSHVKTMTRLMP 272          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A139AB28_GONPJ (tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AB28_GONPJ)

HSP 1 Score: 55.8 bits (133), Expect = 2.930e-7
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 0
Query:    1 LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSG 68
            L++ E W +  A+   FPL++AVY+H+R Q + V++G  Y A +VLY   P   HS + V V+   +G
Sbjct:  127 LSSSELWAHFTAQDPRFPLLYAVYKHYRKQGWVVRSGAVYAADYVLYRTGPAYDHSEFVVTVLSLETG 194          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 55.5 bits (132), Expect = 5.200e-7
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0
Query:   14 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCS 66
            + +F L    Y   RA+   V+ G KYG HF +YEGSPDE H+RY VH +  S
Sbjct:  256 QDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTAS 308          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-6
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0
Query:   14 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHV 62
            + +F L    Y   R++   V+ G KYG HF +YEGSPDE H+RY VH 
Sbjct:  255 QNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHA 303          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A7S3Z2U5_9EUKA (tRNA-intron lyase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2U5_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 8.860e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   16 DFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHV 62
             F   +AVY +FR++ + V++G K+GA F+LYEGSP  +H +Y V V
Sbjct:   96 SFSARYAVYHYFRSRGWIVRSGLKFGADFLLYEGSPSRFHGKYSVIV 142          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A0A7LD52_9ARCH (EndA protein n=1 Tax=Candidatus Methanoplasma termitum TaxID=1577791 RepID=A0A0A7LD52_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.190e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0
Query:   14 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVH 61
            +++F L    +R  R +   V+ G KYGAHF +YEGSPD  H++Y VH
Sbjct:  256 QEEFELRLDAFRDMRKRGMVVKTGFKYGAHFRVYEGSPDTDHAKYLVH 303          
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: M4BAF9_HYAAE (tRNA-intron lyase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAF9_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.940e-5
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0
Query:   17 FPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRL 84
            F   F +Y+HFR + +  + G  YGAH+VLY GS + +HS Y V+V           SW  +++ TR+
Sbjct:   96 FTRTFVIYQHFRRRGWIPRPGLNYGAHYVLYRGSAEAFHSEYIVYVQRDGEV----SSWNSIQSHTRI 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LLV6_ECTSI4.010e-3975.58tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A139AB28_GONPJ2.930e-738.24tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Go... [more]
M4YIW8_THEXX5.200e-747.17tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
A0A0W7TI51_9ARCH2.570e-646.94Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
A0A7S3Z2U5_9EUKA8.860e-646.81tRNA-intron lyase (Fragment) n=1 Tax=Lotharella gl... [more]
A0A0A7LD52_9ARCH1.190e-545.83EndA protein n=1 Tax=Candidatus Methanoplasma term... [more]
M4BAF9_HYAAE1.940e-536.76tRNA-intron lyase n=1 Tax=Hyaloperonospora arabido... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 16..85
e-value: 1.0E-14
score: 56.4
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 17..63
e-value: 5.1E-14
score: 52.1
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 2..83
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 16..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72752contigH-elongata_contig72752:2370..2854 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72752.14949.1mRNA_H-elongata_contig72752.14949.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72752 2370..2854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72752.14949.1 ID=prot_H-elongata_contig72752.14949.1|Name=mRNA_H-elongata_contig72752.14949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGS
PDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRLMP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf