prot_H-elongata_contig72657.14936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72657.14936.1
Unique Nameprot_H-elongata_contig72657.14936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length175
Homology
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: W7U2W4_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2W4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.370e-65
Identity = 106/175 (60.57%), Postives = 132/175 (75.43%), Query Frame = 0
Query:    1 KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRFDDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYA---EDDPSSPGGKARADFSWQRVR 172
            KDK+ LER L  EAR CQ L+LWLDCD EGENIAFEV++VC   N  +R+ RARFSALIPREI ++++ L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD ++D +ISYGPCQFPT+GFVVDRYK I++FQ E FW I+M Y    ED    P G  R  F W+R R
Sbjct:   97 KDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITR--FQWKRER 269          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A453IUH3_AEGTS (DNA topoisomerase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IUH3_AEGTS)

HSP 1 Score: 197 bits (500), Expect = 2.090e-60
Identity = 99/172 (57.56%), Postives = 126/172 (73.26%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSW 168
            DK+D++R L EEAR CQWLVLWLDCDREGENIA+EV+++C   NRN+ I RARFSALIPREI  +VQ L  PN+  A AV+ARQEIDLR+G++FTRFQTM L+  F      + ++ V+SYGPCQFPTLGF+V+R+  IQA +PE FW+I   +  D+ +       A F W
Sbjct:   89 DKQDIKRTLEEEARTCQWLVLWLDCDREGENIAYEVVDICAGANRNLNIWRARFSALIPREIHEAVQHLARPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGT-------ASFIW 253          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.110e-60
Identity = 105/175 (60.00%), Postives = 132/175 (75.43%), Query Frame = 0
Query:    1 KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRFDDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYA---EDDPSSPGGKARADFSWQRVR 172
            KDK+ LER L  EAR CQ L+LWLDCD EGENIAFEV++VC   N  +R+ RARFSALIPREI ++++ L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD ++D +ISYGPCQFPT+GFVVDRYK I++FQ E FW I+M Y    E+    P G  R  F W+R R
Sbjct:   97 KDKEGLERCLKSEARACQRLILWLDCDLEGENIAFEVMDVCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGARENGDEGPQGFTR--FQWKRER 269          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A0L9UEG3_PHAAN (DNA topoisomerase n=2 Tax=Vigna TaxID=3913 RepID=A0A0L9UEG3_PHAAN)

HSP 1 Score: 198 bits (503), Expect = 9.330e-60
Identity = 108/174 (62.07%), Postives = 126/174 (72.41%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF--DDLQDG---VISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DKKD++R L EEAR CQWLVLWLDCDREGENIAFEVI+VC   N ++ I RARFSALI REI +SVQ L  P +  A AV+ARQEIDLR+G++FTRFQTM ++  F  D   DG   V+SYGPCQFPTLGFVV+RY  IQA +PE FWSI   +  D      G+  A FSW R
Sbjct:   93 DKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIDVCTAVNPHLTIKRARFSALIEREIHHSVQNLEEPKKSLADAVDARQEIDLRIGASFTRFQTMLMKDAFAIDTATDGRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCAHDSD------GRI-AKFSWMR 259          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A453IUQ1_AEGTS (DNA topoisomerase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IUQ1_AEGTS)

HSP 1 Score: 197 bits (502), Expect = 1.220e-59
Identity = 100/174 (57.47%), Postives = 127/174 (72.99%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DK+D++R L EEAR CQWLVLWLDCDREGENIA+EV+++C   NRN+ I RARFSALIPREI  +VQ L  PN+  A AV+ARQEIDLR+G++FTRFQTM L+  F      + ++ V+SYGPCQFPTLGF+V+R+  IQA +PE FW+I   +  D+ +       A F W R
Sbjct:   82 DKQDIKRTLEEEARTCQWLVLWLDCDREGENIAYEVVDICAGANRNLNIWRARFSALIPREIHEAVQHLARPNKLFADAVDARQEIDLRIGASFTRFQTMLLKDAFVLDVSGEERNMVLSYGPCQFPTLGFIVERFWEIQAHEPEEFWTINCSHTSDEGT-------ASFIWIR 248          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A1S4CAX6_TOBAC (DNA topoisomerase n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CAX6_TOBAC)

HSP 1 Score: 198 bits (504), Expect = 1.430e-59
Identity = 102/174 (58.62%), Postives = 126/174 (72.41%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DK D++R L EEARGCQW++LWLDCDREGENIAFEV+EVC + N N+ + RARFSALI REI  SVQ L  PN+  + AV+ RQEIDLR+G++FTRFQTM L+  F      D ++ V+SYGPCQFPTLGFVV+RY  IQA +PE FW+I   +  D+ S       A F+W R
Sbjct:  107 DKLDIKRTLEEEARGCQWIILWLDCDREGENIAFEVLEVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCTHNFDEGS-------ATFNWMR 273          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A6H5JJR2_9PHAE (DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.830e-59
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ 104
            DKKDLERQLV+EARGCQWLVLWLDCDREGENIA+EVIEVC RRNRN+RILRARFSALIPR+ILNSVQ L PPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ
Sbjct:   97 DKKDLERQLVDEARGCQWLVLWLDCDREGENIAYEVIEVCKRRNRNIRILRARFSALIPRDILNSVQNLVPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQ 199          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: M1BH01_SOLTU (DNA topoisomerase n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BH01_SOLTU)

HSP 1 Score: 193 bits (490), Expect = 3.720e-59
Identity = 99/174 (56.90%), Postives = 124/174 (71.26%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DK D++R L  EAR CQW+VLWLDCDREGENIAFEV++VC + N N+ + RARFSALI REI  SVQ L  PN+  + AV+ RQEIDLR+G++FTRFQTM L+  F      D ++ V+SYGPCQFPTLGFVV+RY  IQA +PE FW+I   +  D+ +       A F+W R
Sbjct:   27 DKLDIKRTLEAEARSCQWIVLWLDCDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCTHNSDEGT-------ATFNWMR 193          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A834WWY7_9FABA (DNA topoisomerase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WWY7_9FABA)

HSP 1 Score: 206 bits (524), Expect = 9.920e-59
Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DKKD++R L EEAR CQWLVLWLDCDREGENIAFEVIEVC+  NR++ + RARFSALI REI  SVQ L  PN+  A AV+ARQEIDLR+G++FTRFQTM ++  F      D ++ V+SYGPCQFPTLGF+V+RY  IQA +PE FWSI   +  D+ +       A+FSW R
Sbjct:   98 DKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCMAANRHLTLKRARFSALIDREIHQSVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMRDAFIIDSASDDRNLVLSYGPCQFPTLGFIVERYWEIQAHEPEEFWSINCSHKSDEGT-------ANFSWMR 264          
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Match: A0A2Z7AKT5_9LAMI (DNA topoisomerase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AKT5_9LAMI)

HSP 1 Score: 194 bits (493), Expect = 2.090e-58
Identity = 100/174 (57.47%), Postives = 125/174 (71.84%), Query Frame = 0
Query:    2 DKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRILRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQSRF-----DDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEYAEDDPSSPGGKARADFSWQR 170
            DK D+++ L EEAR CQWL+LWLDCDREGENIAFEV+EVC R NRN+ I RARFSALI R+I  +VQ L  PN+  A AV+ RQEIDLR+G++FTRFQTM L+  F      D ++ V+SYGPCQFPTLGFVV+R+  IQ+ +PE FW+I   +   + +       A FSW R
Sbjct:   96 DKSDIQKTLEEEARTCQWLILWLDCDREGENIAFEVVEVCTRANRNLNIWRARFSALIDRDIHYAVQHLLRPNQLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFVLDVSADDRNLVLSYGPCQFPTLGFVVERFWEIQSHEPEEFWTINCTHNSHEGT-------ASFSWMR 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72657.14936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U2W4_9STRA2.370e-6560.57DNA topoisomerase n=1 Tax=Nannochloropsis gaditana... [more]
A0A453IUH3_AEGTS2.090e-6057.56DNA topoisomerase n=2 Tax=Aegilops tauschii subsp.... [more]
A0A4D9CZ97_9STRA2.110e-6060.00DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]
A0A0L9UEG3_PHAAN9.330e-6062.07DNA topoisomerase n=2 Tax=Vigna TaxID=3913 RepID=A... [more]
A0A453IUQ1_AEGTS1.220e-5957.47DNA topoisomerase n=1 Tax=Aegilops tauschii subsp.... [more]
A0A1S4CAX6_TOBAC1.430e-5958.62DNA topoisomerase n=2 Tax=Nicotiana TaxID=4085 Rep... [more]
A0A6H5JJR2_9PHAE2.830e-5993.20DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
M1BH01_SOLTU3.720e-5956.90DNA topoisomerase n=1 Tax=Solanum tuberosum TaxID=... [more]
A0A834WWY7_9FABA9.920e-5960.92DNA topoisomerase n=1 Tax=Senna tora TaxID=362788 ... [more]
A0A2Z7AKT5_9LAMI2.090e-5857.47DNA topoisomerase n=1 Tax=Dorcoceras hygrometricum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013497DNA topoisomerase, type IA, centralPRINTSPR00417PRTPISMRASEIcoord: 20..33
score: 53.58
coord: 115..133
score: 38.03
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 73..154
e-value: 5.7E-21
score: 75.0
IPR003601DNA topoisomerase, type IA, domain 2SMARTSM00436topIban2coord: 49..145
e-value: 1.4E-31
score: 120.9
NoneNo IPR availableGENE3D3.40.50.140coord: 1..73
e-value: 9.0E-23
score: 83.1
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 1..172
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 74..151
e-value: 8.8E-30
score: 105.6
IPR006171TOPRIM domainPFAMPF01751Toprimcoord: 4..57
e-value: 2.0E-8
score: 34.4
IPR006171TOPRIM domainPROSITEPS50880TOPRIMcoord: 1..58
score: 15.125
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 1..172
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 2..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72657contigH-elongata_contig72657:196..2563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72657.14936.1mRNA_H-elongata_contig72657.14936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72657 196..2563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72657.14936.1 ID=prot_H-elongata_contig72657.14936.1|Name=mRNA_H-elongata_contig72657.14936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
KDKKDLERQLVEEARGCQWLVLWLDCDREGENIAFEVIEVCLRRNRNMRI
LRARFSALIPREILNSVQRLTPPNEHQAKAVEARQEIDLRLGSAFTRFQT
MRLQSRFDDLQDGVISYGPCQFPTLGFVVDRYKRIQAFQPEAFWSIKMEY
AEDDPSSPGGKARADFSWQRVRGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013497Topo_IA_cen
IPR003601Topo_IA_2
IPR013824Topo_IA_cen_sub1
IPR006171TOPRIM_domain
IPR000380Topo_IA
IPR023405Topo_IA_core_domain