prot_H-elongata_contig72530.14922.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72530.14922.1
Unique Nameprot_H-elongata_contig72530.14922.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 9.910e-30
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQ 97
            F S PVGPIGA +QLKEE K  RV IE HL   LNNF+VS H+D+ TL+ +++ FR   +W +PTIIVQ L+ RY P  NP GFLQIMQAINV +DQ
Sbjct:  537 FHSPPVGPIGASIQLKEEYKGFRVCIEGHLSRHLNNFVVSCHQDRATLMRIIRAFRGNQRWFVPTIIVQTLQPRYRPQSNPPGFLQIMQAINVDNDQ 633          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.070e-25
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGK-----WMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQ 97
            F S PVGPIGA +QLKEEC+  R  IE HL  +LNNF+VS  +DK  L+ +++++R + +     + +PTIIVQ  ++RY PP+NP G+LQIMQAINV +DQ
Sbjct:  630 FSSPPVGPIGASIQLKEECQEFRACIEGHLSRNLNNFVVSCQQDKTRLMAVVRSYRGSYRGSDKNFPLPTIIVQAPQARYRPPQNPPGYLQIMQAINVNNDQ 731          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A7S3EF87_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EF87_9RHOD)

HSP 1 Score: 51.6 bits (122), Expect = 2.760e-5
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPEN---PEGFLQIMQAINVTDDQV 98
            F+ +P+GP+GAYV +KEE  +   +I+  L  +L+ ++V N  D+G L  L+   +R+ +     II    ++RY+ P++   P G   +M AI V++D V
Sbjct:  519 FKKKPIGPVGAYVNVKEEEWAR--AIQHCLGSTLSAYLVDNSHDQGVLRKLVP--QRSYQ----AIIQTQFDARYDIPKSARAPHGLYAVMDAITVSEDPV 611          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A044QPJ6_ONCVO (AAA_23 domain-containing protein n=2 Tax=Onchocerca TaxID=6281 RepID=A0A044QPJ6_ONCVO)

HSP 1 Score: 50.8 bits (120), Expect = 5.130e-5
Identity = 31/100 (31.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 98
            F  +P+GPIGAY+++K++  S  +++E  LR  L+ ++  N +D+  L ++++ +       M  II +  ESRY+    E P  +L + + I + DD V
Sbjct:  503 FSKKPIGPIGAYIRIKDD--SWALAVECCLRNLLSIWLCDNVQDRNILDSILRKYNIHA---MGYIISKFSESRYDITLFEPPSEYLTVARVITIADDNV 597          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A1S0TZX9_LOALO (SMC_N domain-containing protein n=2 Tax=Loa loa TaxID=7209 RepID=A0A1S0TZX9_LOALO)

HSP 1 Score: 50.8 bits (120), Expect = 5.130e-5
Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 98
            F  +P+GPIGAY+++K+E  S  +++E  LR  L+ ++  N +D+  L ++++ +       M  II +  ESRY+    E P  +L + + + VTDD V
Sbjct:  503 FSKKPIGPIGAYIRIKDE--SWALAVEHCLRHLLSVWLCDNVQDRNILDSILQKYNIR---TMGYIISKFSESRYDITLFEPPSEYLTVARMMTVTDDNV 597          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A8K0TNV0_9PEZI (Uncharacterized protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TNV0_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 5.160e-5
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQL-KEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPL--ESRYNPPENPEGFLQIMQAINVTDDQV 98
            F++RP+GPIG+Y+QL K E  S    IEA     LN+F+VS+  D+  L   M+T   +G  +   +I + L  ++++N P+    FL I++A+ + DD V
Sbjct:  570 FETRPLGPIGSYIQLLKPEWSS---IIEATFGQILNSFLVSSKNDQQLLAQHMRTLGISGTGI---VIGRRLAAKTKFNEPDG--RFLTILRALKINDDWV 662          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A8J2M7J7_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2M7J7_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 7.010e-5
Identity = 32/100 (32.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 98
            F  +P+GPIGAY+++K++  S  +++E  LR  L+ ++  N +D+  L ++++ +       M  II +  ESRYN    E P  +L + + + V DD V
Sbjct:  503 FSKKPIGPIGAYIRIKDD--SWALAVEHCLRHLLSVWLCDNVQDRNILDSILQKYNIRA---MGYIISKFSESRYNITLFEPPSEYLTVARMVTVMDDNV 597          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A0R3QQ20_9BILA (AAA_23 domain-containing protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QQ20_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 7.010e-5
Identity = 34/101 (33.66%), Postives = 61/101 (60.40%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFR-RAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 98
            F  +P+GPIGAY+++K++  S  +++E  LR  L+ ++  N  D+  L ++++++  RA  +    II + LESRY+    E P  +L + + I VT+D V
Sbjct:  524 FSKKPIGPIGAYIRIKDD--SWALAVEHCLRHLLSVWLCDNVHDRNILDSILQSYNIRAVGY----IISKFLESRYDITSFEPPSEYLTVARMITVTNDNV 618          
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: UPI0019008667 (DNA repair protein n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI0019008667)

HSP 1 Score: 50.1 bits (118), Expect = 9.590e-5
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 0
Query:    1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQVHCTYIV 104
            F  +PVGPIGA++QL +   S    +E  L  +L+ F+VSN +D+  L  LM+ F  A   + P II + L    N  E  E F  +++ +   ++ V    IV
Sbjct:  569 FDEKPVGPIGAHIQLLQPAWSS--ILETTLGATLDGFLVSNKRDQQRLARLMQRFNLAR--IPPIIIGKRLPPNVNLKEPDERFDTVLRVLKCDNELVRSQLIV 668          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4M1_ECTSI9.910e-3060.82Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI2.070e-2552.94Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S3EF87_9RHOD2.760e-533.66Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A044QPJ6_ONCVO5.130e-531.00AAA_23 domain-containing protein n=2 Tax=Onchocerc... [more]
A0A1S0TZX9_LOALO5.130e-533.00SMC_N domain-containing protein n=2 Tax=Loa loa Ta... [more]
A0A8K0TNV0_9PEZI5.160e-536.63Uncharacterized protein n=1 Tax=Plectosphaerella c... [more]
A0A8J2M7J7_9BILA7.010e-532.00Hypothetical protein n=1 Tax=Cercopithifilaria joh... [more]
A0A0R3QQ20_9BILA7.010e-533.66AAA_23 domain-containing protein n=1 Tax=Brugia ti... [more]
UPI00190086679.590e-533.65DNA repair protein n=1 Tax=Colletotrichum karsti T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 1..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72530contigH-elongata_contig72530:142..2886 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72530.14922.1mRNA_H-elongata_contig72530.14922.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72530 142..2886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72530.14922.1 ID=prot_H-elongata_contig72530.14922.1|Name=mRNA_H-elongata_contig72530.14922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLIT
LMKTFRRAGKWMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQVHC
TYIVLL*
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