prot_H-elongata_contig72378.14906.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72378.14906.1
Unique Nameprot_H-elongata_contig72378.14906.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: D8LN33_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN33_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.240e-22
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR 48
            GVDV AALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTR
Sbjct:  281 GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTR 328
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A6H5JPV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.240e-22
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR 48
            GVDV AALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTR
Sbjct:  340 GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTR 387
[Close]
BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A835ZAK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.520e-8
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:    2 VDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCL 46
            V   AALCCLRG  Y  +D+R RA VWLR AL  D +CV+AL  L
Sbjct:  249 VHPLAALCCLRGSMYVEVDSRARAVVWLRAALAADYKCVDALHML 293
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A7R9YB69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB69_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCL 46
            G+DV A+LC   G A+  L+NR RA  +L  ALE+D RCVEA++ L
Sbjct:  138 GIDVVASLCTTMGLAFEVLENRTRATGYLVAALEVDPRCVEAMETL 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LN33_ECTSI5.240e-2295.83Putative subunit of the Anaphase Promoting Complex... [more]
A0A6H5JPV4_9PHAE5.240e-2295.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK2_9STRA6.520e-857.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YB69_9STRA7.150e-652.17Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..48
e-value: 1.5E-11
score: 45.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72378contigH-elongata_contig72378:247..393 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72378.14906.1mRNA_H-elongata_contig72378.14906.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72378 247..393 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72378.14906.1 ID=prot_H-elongata_contig72378.14906.1|Name=mRNA_H-elongata_contig72378.14906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf