prot_H-elongata_contig72336.14904.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72336.14904.1
Unique Nameprot_H-elongata_contig72336.14904.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length324
Homology
[Close]
BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Match: D8LQU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.380e-24
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 0 
Query:   35 WKSAWCTSGRSKTTSVSLAVTTCSRTEEVLDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLSPGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCK 141
            W+S W   GR K TSVSLA  T +R E ++ Q SFH A  + GG+FCLAA +GNLGG+Q AA++   GW+S G +  MT  AA+ GHL IL WAK  GC +S+ + +
Sbjct:   75 WRSTWEAEGRPKKTSVSLATATNARVETIMGQPSFHAATGHLGGVFCLAASAGNLGGIQTAARESGDGWKSLGPVVMMTAEAASAGHLHILEWAKSSGCRLSVHVLR 181
[Close]
BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Match: A0A6H5JT58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT58_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.240e-14
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0 
Query:   64 LDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLSPGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCK 141
            + Q SFH A  + GG+FCLAA +GNLGG+Q AA++   GW S G +  MT  AA+ GHL IL WAK  GC +S+ + +
Sbjct:    1 MGQPSFHVATRHLGGVFCLAASAGNLGGIQTAARESGDGWESLGSVVMMTAEAASAGHLHILEWAKSAGCRLSVHILR 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQU6_ECTSI7.380e-2450.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT58_9PHAE1.240e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 79..323
e-value: 3.8E-17
score: 63.9
NoneNo IPR availablePANTHERPTHR46586FAMILY NOT NAMEDcoord: 64..302
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 124..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72336contigH-elongata_contig72336:251..1222 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72336.14904.1mRNA_H-elongata_contig72336.14904.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72336 251..1222 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72336.14904.1 ID=prot_H-elongata_contig72336.14904.1|Name=mRNA_H-elongata_contig72336.14904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
RAKQLLQDHADLISHLLTYSHPQDYLFVASVSRAWKSAWCTSGRSKTTSV
SLAVTTCSRTEEVLDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLS
PGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCKYAAQGGHLN
ILKWALIEGYPLDQDTCALAAENGHLEVLKWAREQGCSWDTRTCSGAAGG
GHLEVLKWARSQGCSWNKETCEFAALHGNLALLKWVREQGCPWDARTCSF
AGLGGHIEILRWARENKCEWDEDTCACAAQGGHLEILRWAREQGCPWDAK
QCASIASRRQYSGVKEWITRHAQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf