prot_H-elongata_contig7224.14896.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7224.14896.1
Unique Nameprot_H-elongata_contig7224.14896.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: D7G9A0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A0_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.050e-28
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 0
Query:   46 RAAPRRATSLSSEGFYRGTA-----GSWAKAEGDTGEEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            RA+PRR T   +EGF  G++     G      G+  EE+ECVICMEEF+ +DPEM TLCSCGVNKTFFHYSCLL+WLSKHSYCPACR
Sbjct:  105 RASPRRGTI--NEGFRGGSSAVAGLGGRRAPGGEAEEERECVICMEEFSKEDPEMLTLCSCGVNKTFFHYSCLLQWLSKHSYCPACR 189          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A6H5KFU5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.700e-26
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0
Query:   46 RAAPRRATSLSSEGFYRGTA-----GSWAKAEGDTGEEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            RA+PR+ T   +EGF  G++     G      G+  EE+ECVICMEEF  +DPEM TLCSCGVNKTFFHY+CLL+WLSKHSYCPACR
Sbjct:  320 RASPRQGTC--NEGFRGGSSAVAGLGGRRAPGGEAEEERECVICMEEFCKEDPEMLTLCSCGVNKTFFHYACLLQWLSKHSYCPACR 404          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A835Z175_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z175_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.670e-17
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0
Query:   83 ICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            +C+ EFT +DPE+ TLCSCG+NKT FHY+CLL WL  HSYCPACR
Sbjct:    1 MCLGEFTKEDPEVLTLCSCGMNKTAFHYACLLGWLEHHSYCPACR 45          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A6U0WDD7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WDD7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-16
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   79 KECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            KECVICM+EFT  +PE+  LC CGVNKT FHY CLL+W+   ++CP CR
Sbjct:  120 KECVICMDEFTEKNPEVPVLCDCGVNKTHFHYHCLLEWMQHRNFCPVCR 168          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A7S2CKZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKZ4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.930e-15
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   77 EEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPAC 126
            E+ ECVICME F   +P M TLC CGVNKT FHY+CLL W  K  +CPAC
Sbjct:   71 EDVECVICMETFDASNPMMPTLCKCGVNKTCFHYACLLTWKEKQDHCPAC 120          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A2P4YDS4_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDS4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.610e-14
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   80 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct:  146 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 193          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A329SNC7_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SNC7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.760e-14
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   80 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct:  149 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 196          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: G4YPL0_PHYSP (RING-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YPL0_PHYSP)

HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   80 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct:  152 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 199          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A482RWP0_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWP0_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 3.640e-14
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0
Query:   80 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPAC 126
            EC+IC+EEFT D+P+++TLC+CG N++ FHY CLL WL   + CP C
Sbjct:   77 ECIICLEEFTTDNPKVKTLCNCGENRSSFHYPCLLYWLEHKASCPNC 123          
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A3M6VKV0_9STRA (RING-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKV0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.650e-14
Identity = 26/50 (52.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:   78 EKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 127
            E EC++C++ F+ D+P++RTLC+CG+N+T FH SCL +WL++ + CP CR
Sbjct:  115 ELECIMCLDTFSQDNPKIRTLCNCGMNRTNFHMSCLFEWLNREANCPVCR 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9A0_ECTSI1.050e-2865.52RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFU5_9PHAE2.700e-2663.22RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z175_9STRA1.670e-1771.11RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6U0WDD7_9STRA1.380e-1663.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2CKZ4_9STRA1.930e-1564.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2P4YDS4_9STRA2.610e-1456.25RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A329SNC7_9STRA2.760e-1456.25RING-type domain-containing protein n=2 Tax=Phytop... [more]
G4YPL0_PHYSP2.910e-1456.25RING-type domain-containing protein n=3 Tax=Phytop... [more]
A0A482RWP0_9ARCH3.640e-1457.45RING-type domain-containing protein n=1 Tax=archae... [more]
A0A3M6VKV0_9STRA5.650e-1452.00RING-type domain-containing protein n=1 Tax=Perono... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 35..127
e-value: 7.0E-13
score: 50.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 79..127
e-value: 9.9E-11
score: 41.8
NoneNo IPR availablePANTHERPTHR15710:SF51coord: 67..127
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 67..127
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 72..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7224contigH-elongata_contig7224:7744..10289 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7224.14896.1mRNA_H-elongata_contig7224.14896.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7224 6674..10289 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7224.14896.1 ID=prot_H-elongata_contig7224.14896.1|Name=mRNA_H-elongata_contig7224.14896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MKPRRISFPTAHQLLPSPAFSSMGEENGYGVSQDKSETSKGMLSCRAAPR
RATSLSSEGFYRGTAGSWAKAEGDTGEEKECVICMEEFTVDDPEMRTLCS
CGVNKTFFHYSCLLKWLSKHSYCPACR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING