prot_H-elongata_contig72083.14885.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72083.14885.1
Unique Nameprot_H-elongata_contig72083.14885.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
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BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Match: A0A6H5JDM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.590e-22
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0 
Query:    1 YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVASTNSKKKIEKLVEELLY 65
            YRKLARR++ V FGR+DAS+ PELA+ LGL  VP+FVTFR GE VT  +T+SKK IEKLVEELLY
Sbjct:  193 YRKLARRQEQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLY 257
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BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Match: D8LU97_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU97_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 0 
Query:    1 YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVASTNSKKKIEKLVEELLY 65
            YRKLARR++ V FGR+DASS PELA+ LGL  VP+FVTFR GE VT  +T+SKK IEKLVEELLY
Sbjct:  440 YRKLARRQEQVLFGRVDASSHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELLY 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72083.14885.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDM2_9PHAE8.590e-2270.77Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D8LU97_ECTSI3.280e-2172.31Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 1..65
e-value: 2.3E-8
score: 35.6
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 6..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72083contigH-elongata_contig72083:2349..2546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72083.14885.1mRNA_H-elongata_contig72083.14885.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72083 2349..2546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72083.14885.1 ID=prot_H-elongata_contig72083.14885.1|Name=mRNA_H-elongata_contig72083.14885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
YRKLARREQHVWFGRIDASSRPELAKDLGLQVVPAFVTFRRGERVTVAST
NSKKKIEKLVEELLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf