prot_H-elongata_contig72051.14881.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig72051.14881.1
Unique Nameprot_H-elongata_contig72051.14881.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: D8LQ38_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ38_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.380e-15
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA 44
            CAICLA+Y+EEE IKVLPCGH FH++CLD WLE +  CP+CKA
Sbjct:  141 CAICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKA 183          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A0D2MUW8_9CHLO (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-13
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 43
            C ICL SYE+ E +K LPCGH +H+EC+D WLE+  +CP+CK
Sbjct:  205 CTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A2V3IJU4_9FLOR (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-13
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 43
            CAICL  YE+ E+++ L C H FHAEC+D WLE+R+LCP+CK
Sbjct:  104 CAICLGPYEQGESVRHLTCNHAFHAECVDIWLEKRSLCPICK 145          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A2P6NUT9_9EUKA (RING finger protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NUT9_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 4.580e-13
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 43
            C+IC+  YE E+ ++VLPCGH FH EC+D WL++R LCP+CK
Sbjct:   82 CSICIGDYEAEQMVRVLPCGHDFHVECIDEWLKQRLLCPLCK 123          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A6V7NGK8_ANACO (RING-type E3 ubiquitin transferase n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NGK8_ANACO)

HSP 1 Score: 64.7 bits (156), Expect = 5.700e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLP-CGHKFHAECLDCWLERRTLCPMCKA 44
            CA+CLA +EE EA++VLP C H FH  C+D WL  RT CP+C+A
Sbjct:   72 CAVCLADFEEGEAVRVLPECAHCFHVACIDAWLRARTSCPVCRA 115          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A6P5G9T4_ANACO (RING-type E3 ubiquitin transferase n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G9T4_ANACO)

HSP 1 Score: 64.7 bits (156), Expect = 6.190e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLP-CGHKFHAECLDCWLERRTLCPMCKA 44
            CA+CLA +EE EA++VLP C H FH  C+D WL  RT CP+C+A
Sbjct:   76 CAVCLADFEEGEAVRVLPECAHCFHVACIDAWLRARTSCPVCRA 119          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: M1B9A3_SOLTU (RING zinc finger protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1B9A3_SOLTU)

HSP 1 Score: 65.5 bits (158), Expect = 6.330e-12
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA 44
            CAICL  Y+++ AI  L CGHKFHAEC++ WL+R+  CP C+A
Sbjct:  110 CAICLLEYKDKYAIATLQCGHKFHAECINKWLQRKDTCPFCRA 152          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A7S4RU15_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RU15_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 43
            CA+CL  YE+ + ++ LPCGH+FH EC+D WLE  T CP C+
Sbjct:  922 CAVCLVEYEDGDEVRHLPCGHEFHVECIDSWLENHTSCPTCR 963          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A7S3V245_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V245_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 43
            CAIC+  YEE + +++LPC H FHAEC+D WL +   CPMCK
Sbjct:  636 CAICICDYEEGDQVRLLPCQHYFHAECIDVWLRKNKACPMCK 677          
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A822XPG5_NELNU (RING-type domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XPG5_NELNU)

HSP 1 Score: 61.2 bits (147), Expect = 1.620e-11
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    2 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA 44
            CAICL + +  + I+ LPC HKFH +C+D WL R+TLCP+CK+
Sbjct:   10 CAICLETPKTGDKIRHLPCLHKFHKDCIDPWLRRKTLCPVCKS 52          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ38_ECTSI3.380e-1572.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0D2MUW8_9CHLO1.970e-1359.52E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium ... [more]
A0A2V3IJU4_9FLOR2.000e-1361.90E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
A0A2P6NUT9_9EUKA4.580e-1359.52RING finger protein n=1 Tax=Planoprotostelium fung... [more]
A0A6V7NGK8_ANACO5.700e-1259.09RING-type E3 ubiquitin transferase n=1 Tax=Ananas ... [more]
A0A6P5G9T4_ANACO6.190e-1259.09RING-type E3 ubiquitin transferase n=1 Tax=Ananas ... [more]
M1B9A3_SOLTU6.330e-1258.14RING zinc finger protein n=1 Tax=Solanum tuberosum... [more]
A0A7S4RU15_9STRA1.600e-1154.76Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3V245_9STRA1.600e-1157.14Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A822XPG5_NELNU1.620e-1155.81RING-type domain-containing protein n=1 Tax=Nelumb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 1..43
e-value: 0.0076
score: 8.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 2..42
e-value: 4.0E-8
score: 43.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 1..43
e-value: 4.2E-14
score: 52.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 2..43
score: 13.05
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..44
e-value: 3.7E-17
score: 63.3
NoneNo IPR availablePANTHERPTHR45931:SF3E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 2..43
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 2..43
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72051contigH-elongata_contig72051:2395..2982 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72051.14881.1mRNA_H-elongata_contig72051.14881.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig72051 2365..2982 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig72051.14881.1 ID=prot_H-elongata_contig72051.14881.1|Name=mRNA_H-elongata_contig72051.14881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD