prot_H-elongata_contig71822.14859.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71822.14859.1
Unique Nameprot_H-elongata_contig71822.14859.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length247
Homology
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BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Match: D7G5P7_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P7_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.370e-71
Identity = 127/207 (61.35%), Postives = 144/207 (69.57%), Query Frame = 0 
Query:    2 RRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCDWFGKEGCRGCDVSNCVGTDGDCVPC-----EEAAPVSAPLEGLTNAPADVLDELSTSIPATASDTEPCTIEWCESMADEADMAYINDNSLTLYCDPKCSDTSSDPYGGLWCNMRGLGQLCRACREDDCDDWDTNDTCLPCAEIQ------VTPAPSDI 197
            RRLD+CSSDSDC  S+A+ EALD  G+ I+CD ACEDTG+DI+GGTWC+ FG EGCR CDV NC G+ G CVPC     EE  P     EGLT AP     E     P  AS    CT   CE  AD AD++YI+DNSLTLYCD KCSDT SDP+GGLWCNMRGLGQLCRACR D+C  W  +DTCLPC E+Q      VTPAPSD+
Sbjct:   38 RRLDACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEGSSGACVPCNGELPEETTPAPQE-EGLTLAPISP-GETDPPFPIDASS---CTAAACEDNADSADLSYIDDNSLTLYCDDKCSDTPSDPFGGLWCNMRGLGQLCRACRADNCVGWTEDDTCLPCNELQETLPPSVTPAPSDL 239
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BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Match: A0A6H5KAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.690e-26
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:    2 RRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCDWFGKEGCRGCDVSNCVGTDGDCVPC-----EEAAPVSAPLE 86
            RRL +CSSDSDC  S+A+ EALD  G+ I+CD ACEDTG+DI+GGTWC+ FG EGCR CDV NC  + G CVPC     EE  P  APLE
Sbjct:  126 RRLGACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEASSGPCVPCSGELPEETTP--APLE 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P7_ECTSI3.370e-7161.35Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5KAD4_9PHAE1.690e-2662.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71822contigH-elongata_contig71822:564..3137 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71822.14859.1mRNA_H-elongata_contig71822.14859.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71822 564..3137 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71822.14859.1 ID=prot_H-elongata_contig71822.14859.1|Name=mRNA_H-elongata_contig71822.14859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
SRRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCD
WFGKEGCRGCDVSNCVGTDGDCVPCEEAAPVSAPLEGLTNAPADVLDELS
TSIPATASDTEPCTIEWCESMADEADMAYINDNSLTLYCDPKCSDTSSDP
YGGLWCNMRGLGQLCRACREDDCDDWDTNDTCLPCAEIQVTPAPSDIIQT
PAPSEVIPTPLPSEVIPTPLPSEVIPTPLPSEVIPTPLPSEVIPTPL
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