mRNA_H-elongata_contig71822.14859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71822.14859.1
Unique NamemRNA_H-elongata_contig71822.14859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Match: D7G5P7_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P7_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.370e-71
Identity = 127/207 (61.35%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:    4 RRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCDWFGKEGCRGCDVSNCVGTDGDCVPC-----EEAAPVSAPLEGLTNAPADVLDELSTSIPATASDTEPCTIEWCESMADEADMAYINDNSLTLYCDPKCSDTSSDPYGGLWCNMRGLGQLCRACREDDCDDWDTNDTCLPCAEIQ------VTPAPSDI 591
            RRLD+CSSDSDC  S+A+ EALD  G+ I+CD ACEDTG+DI+GGTWC+ FG EGCR CDV NC G+ G CVPC     EE  P     EGLT AP     E     P  AS    CT   CE  AD AD++YI+DNSLTLYCD KCSDT SDP+GGLWCNMRGLGQLCRACR D+C  W  +DTCLPC E+Q      VTPAPSD+
Sbjct:   38 RRLDACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEGSSGACVPCNGELPEETTPAPQE-EGLTLAPISP-GETDPPFPIDASS---CTAAACEDNADSADLSYIDDNSLTLYCDDKCSDTPSDPFGGLWCNMRGLGQLCRACRADNCVGWTEDDTCLPCNELQETLPPSVTPAPSDL 239
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BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Match: A0A6H5KAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.690e-26
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    4 RRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCDWFGKEGCRGCDVSNCVGTDGDCVPC-----EEAAPVSAPLE 258
            RRL +CSSDSDC  S+A+ EALD  G+ I+CD ACEDTG+DI+GGTWC+ FG EGCR CDV NC  + G CVPC     EE  P  APLE
Sbjct:  126 RRLGACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEASSGPCVPCSGELPEETTP--APLE 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71822.14859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P7_ECTSI3.370e-7161.35Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5KAD4_9PHAE1.690e-2662.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71822contigH-elongata_contig71822:564..3137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-12_008660.1
Exons5
Model size741
Cds size741
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71822.14859.1prot_H-elongata_contig71822.14859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71822 564..3137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.5248578-CDS-H-elongata_contig71822:563..6051622931119.5248578-CDS-H-elongata_contig71822:563..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 564..605 +
1691679706.2438822-CDS-H-elongata_contig71822:563..6051691679706.2438822-CDS-H-elongata_contig71822:563..605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 564..605 +
1622931119.5518534-CDS-H-elongata_contig71822:1179..13281622931119.5518534-CDS-H-elongata_contig71822:1179..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 1180..1328 +
1691679706.2512193-CDS-H-elongata_contig71822:1179..13281691679706.2512193-CDS-H-elongata_contig71822:1179..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 1180..1328 +
1622931119.5687704-CDS-H-elongata_contig71822:1712..18461622931119.5687704-CDS-H-elongata_contig71822:1712..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 1713..1846 +
1691679706.265006-CDS-H-elongata_contig71822:1712..18461691679706.265006-CDS-H-elongata_contig71822:1712..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 1713..1846 +
1622931119.5853257-CDS-H-elongata_contig71822:2367..25571622931119.5853257-CDS-H-elongata_contig71822:2367..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 2368..2557 +
1691679706.2754202-CDS-H-elongata_contig71822:2367..25571691679706.2754202-CDS-H-elongata_contig71822:2367..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 2368..2557 +
1622931119.6020195-CDS-H-elongata_contig71822:2911..31371622931119.6020195-CDS-H-elongata_contig71822:2911..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 2912..3137 +
1691679706.2856526-CDS-H-elongata_contig71822:2911..31371691679706.2856526-CDS-H-elongata_contig71822:2911..3137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71822 2912..3137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71822.14859.1

>prot_H-elongata_contig71822.14859.1 ID=prot_H-elongata_contig71822.14859.1|Name=mRNA_H-elongata_contig71822.14859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
SRRLDSCSSDSDCTPSEAEQEALDMNGRDIYCDEACEDTGSDIYGGTWCD
WFGKEGCRGCDVSNCVGTDGDCVPCEEAAPVSAPLEGLTNAPADVLDELS
TSIPATASDTEPCTIEWCESMADEADMAYINDNSLTLYCDPKCSDTSSDP
YGGLWCNMRGLGQLCRACREDDCDDWDTNDTCLPCAEIQVTPAPSDIIQT
PAPSEVIPTPLPSEVIPTPLPSEVIPTPLPSEVIPTPLPSEVIPTPL
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mRNA from alignment at H-elongata_contig71822:564..3137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71822.14859.1 ID=mRNA_H-elongata_contig71822.14859.1|Name=mRNA_H-elongata_contig71822.14859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2574bp|location=Sequence derived from alignment at H-elongata_contig71822:564..3137+ (Himanthalia elongata Himel1 dioecious)
TCAAGGAGGTTGGATTCGTGCTCCAGCGACTCCGATTGCACGGTAAGGGT
CTCAACAACATCGGCATTCTACAGTTTGTGACATGAGGTTGAAGGGATTT
CCCCAAGTGGCGAAGGGGTTCGGGGCCTCATGCCAAAAAGATCTCGCGTT
TCGGAATTCGTGGCGATGGTAAATATAGCTAGACTGGCCATCCTAGGCGA
AAGCCCACGTCGTTTTCTCAGGAACATCTGGCAGTGTACACTATAGTTTG
CTGTATGAAGCACGTTACTGTTAGGACGTTCTGCTTTCGGTGGTATCGAA
TGAGGCACTCCCTTCCCCGTCCCCCGTCCCCCCCCAATTCGCCCTAGGTG
ACCTAGGTGACCTTACTTCCGAAAAATATCACCTTTGAATAAATATATTG
CCACACTCGCCCTTGATATTATAGAGGCTCTAGACAAAGGATCCTTCGTT
TACTCTTCGGAGTGGGAGAAACAAATAAGCGCACGCGGGGACAGTTTTAC
ACCCAGCTGTCGCGTTAGGACTTTCGAGAGACTTTCGACATCTTTATTTA
TTGATACACCCATCCCTCCCCTCCCCCCCCCATGTTTTGCTTTCGCACCG
ACGGTTTCGGTATCAGCCGAGCGAGGCGGAGCAGGAAGCTCTCGACATGA
ACGGTAGGGATATTTACTGCGATGAGGCGTGCGAAGACACCGGAAGTGAT
ATCTACGGGGGAACCTGGTGTGACTGGTTCGGGAAGGAAGGCTGCCGGGG
GTGCGACGTTTCCAAGTGCGTGAGGGATGAATGAAAAAGGAGGGGGAGAT
GATGTGATGTGACGTATATGGAAATATCCGTCGCCGCTAATTCCATGTGT
TTTTCTTTTCGCCTCGGAGTTTATGGAGACTAAACAGGGGGTTGTGATAG
TGCTGGACGGAGACCACTCTGTCGGTTTTGTTTTTCTGTGTCGAACAGCA
CGCGAAGGGTGCGAGACGGAATTAGCGGCGAGTGAGCGCGCATCCGGTGT
GTTTGCGATACAGTTTTTTCCCGCTACCCCATAGAACGCATGCACACATG
CACATGCACACGCAAATATCAGCATCCACATAGATTTGTCGATCGTCGAT
CGACGCCTTGTTTTCTACTCCTGCCGTGCTCTCCCCGTCGATCTATTAGT
TGTGTTGGTACTGACGGAGACTGCGTTCCCTGCGAAGAAGCCGCTCCAGT
CAGTGCGCCTCTGGAGGGATTGACGAATGCCCCGGCGGACGTATTAGACG
AGCTTAGTACATCGATCCCTGCAACCGCGAGCGGTGAGGTCGAGTTGTAC
ACACTGCTACATCTGAAATGACAATCGTGGTTCGATCTCAAGTGGTTATG
TTGGTACGATTGACCTACTGTTGACCTTGGCCCTGGCTGCATGTACTATT
GATAATGATAGTAGTACTGCTGTGAGTTATCGTGATAGTGATCGTGATAG
TGATAGTGATAGGCGGAATTAGCCTTTGCAGCCAACAGCAAAAGCGTCGA
ATGGCGAAAGGACGGGGGTGAGTCTGGGAAAGGCTTAACAGAGAGAAAAA
AACAGTCACAGAAAAAAGCTGGAGGAACCGGCGACCACCGGGCAAGTTTC
GAAGCTTGTAGTAGGAGGCGGTTGCGCCACGCACCTTCCGATAACATCGA
TAGCCCGTCTTCGAAATATGGGCTGGAAAACTGCTCGCCCGCTTACCCAC
CGCTTCCCGCGCAGTGGTCTTGGTCGTAGTTGTGGTAGATATATCCCCCC
TCCCCCCGCGTGTCTCACTTGTTGCCTTCTACGGTATGCGATTTTATGTT
CCAGACACGGAACCGTGCACGATTGAATGGTGCGAATCGATGGCCGACGA
GGCGGACATGGCCTACATCAACGACAATAGCCTTACCCTGTACTGCGACC
CCAAGTGCTCCGACACCTCGTCTGATCCGTACGGAGGGCTGTGGTGTAAC
ATGAGAGGGCTTGGGCAGCTCTGTCGAGCATGTCGGGAGGACGAGTGAGG
ACTCTGTGGTTTTCGGGAGCGGGGGGAGGGAAAAGATCATTGCAACTTGT
TGGATTATTGTGCTATTTTCAGCAAGGGTTTGACAGAATCCGTGCGCGGT
TTTCATTGCCACCATCTGTTAGGAACCGCATGGTGTACACTAGTGATTAC
TACCCTATATACTTGAGTCGTTTGTATCGTGCAAAGGAGACCTCGCTCGG
GAAGCCCTTCGGTGACTTCTTCTAGAAGCTAGGTTTTGTCCCTACTTCGT
GGCACCCACCTTCCCGTGTCTAATTTTCTTCCTCTGTCTCCCTCGTCGGC
CTGTTACCTCGACACTGCCGTTGCGATCTTACACGCTTTGATTCCCAGCT
GTGATGACTGGGATACCAACGACACTTGTCTTCCTTGCGCCGAGATCCAG
GTGACCCCCGCGCCATCCGATATCATACAGACGCCGGCGCCATCCGAGGT
GATACCGACGCCCTTACCATCCGAGGTGATACCGACGCCCTTACCATCCG
AGGTGATACCGACGCCTTTACCATCCGAGGTGATACCAACGCCCTTACCG
TCCGAGGTCATACCGACGCCTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig71822:564..3137+

>mRNA_H-elongata_contig71822.14859.1 ID=mRNA_H-elongata_contig71822.14859.1|Name=mRNA_H-elongata_contig71822.14859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig71822:564..3137+ (Himanthalia elongata Himel1 dioecious)
TCAAGGAGGTTGGATTCGTGCTCCAGCGACTCCGATTGCACGTCAAGGAG
GTTGGATTCGTGCTCCAGCGACTCCGATTGCACGCCGAGCGAGGCGGAGC
AGGAAGCTCTCGACATGAACGGTAGGGATATTTACTGCGATGAGGCGTGC
GAAGACACCGGAAGTGATATCTACGGGGGAACCTGGTGTGACTGGTTCGG
GAAGGAAGGCTGCCGGGGGTGCGACGTTTCCAACCGAGCGAGGCGGAGCA
GGAAGCTCTCGACATGAACGGTAGGGATATTTACTGCGATGAGGCGTGCG
AAGACACCGGAAGTGATATCTACGGGGGAACCTGGTGTGACTGGTTCGGG
AAGGAAGGCTGCCGGGGGTGCGACGTTTCCAATTGTGTTGGTACTGACGG
AGACTGCGTTCCCTGCGAAGAAGCCGCTCCAGTCAGTGCGCCTCTGGAGG
GATTGACGAATGCCCCGGCGGACGTATTAGACGAGCTTAGTACATCGATC
CCTGCAACCGCGAGCGTTGTGTTGGTACTGACGGAGACTGCGTTCCCTGC
GAAGAAGCCGCTCCAGTCAGTGCGCCTCTGGAGGGATTGACGAATGCCCC
GGCGGACGTATTAGACGAGCTTAGTACATCGATCCCTGCAACCGCGAGCG
ACACGGAACCGTGCACGATTGAATGGTGCGAATCGATGGCCGACGAGGCG
GACATGGCCTACATCAACGACAATAGCCTTACCCTGTACTGCGACCCCAA
GTGCTCCGACACCTCGTCTGATCCGTACGGAGGGCTGTGGTGTAACATGA
GAGGGCTTGGGCAGCTCTGTCGAGCATGTCGGGAGGACGAACACGGAACC
GTGCACGATTGAATGGTGCGAATCGATGGCCGACGAGGCGGACATGGCCT
ACATCAACGACAATAGCCTTACCCTGTACTGCGACCCCAAGTGCTCCGAC
ACCTCGTCTGATCCGTACGGAGGGCTGTGGTGTAACATGAGAGGGCTTGG
GCAGCTCTGTCGAGCATGTCGGGAGGACGACTGTGATGACTGGGATACCA
ACGACACTTGTCTTCCTTGCGCCGAGATCCAGGTGACCCCCGCGCCATCC
GATATCATACAGACGCCGGCGCCATCCGAGGTGATACCGACGCCCTTACC
ATCCGAGGTGATACCGACGCCCTTACCATCCGAGGTGATACCGACGCCTT
TACCATCCGAGGTGATACCAACGCCCTTACCGTCCGAGGTCATACCGACG
CCTTTACTGTGATGACTGGGATACCAACGACACTTGTCTTCCTTGCGCCG
AGATCCAGGTGACCCCCGCGCCATCCGATATCATACAGACGCCGGCGCCA
TCCGAGGTGATACCGACGCCCTTACCATCCGAGGTGATACCGACGCCCTT
ACCATCCGAGGTGATACCGACGCCTTTACCATCCGAGGTGATACCAACGC
CCTTACCGTCCGAGGTCATACCGACGCCTTTA
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