prot_H-elongata_contig71469.14808.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71469.14808.1
Unique Nameprot_H-elongata_contig71469.14808.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: D8LEE9_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE9_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 9.470e-30
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 0
Query:    2 QVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            QVPEAKFS+DLSPMSVHI+QRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRV+KQKKI
Sbjct:  389 QVPEAKFSYDLSPMSVHIKQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVVKQKKI 447          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A835YQ98_9STRA (Endoplasmic reticulum-golgi intermediate compartment-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ98_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.190e-24
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    3 VPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQK 58
            VPEAKFSFDLSPM VH+R R R+WYDF+TSV+AIVGGTFTVVGV+D+ILFRV+KQK
Sbjct:  396 VPEAKFSFDLSPMCVHVRTRARRWYDFVTSVMAIVGGTFTVVGVVDSILFRVLKQK 451          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A482S815_9ARCH (COPIIcoated_ERV domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S815_9ARCH)

HSP 1 Score: 83.2 bits (204), Expect = 7.380e-20
Identity = 34/59 (57.63%), Postives = 50/59 (84.75%), Query Frame = 0
Query:    2 QVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            ++P+A+F++DLSPMSVHIR + R+WY+F+TS+ AI+GGTFTV+G+L   L  ++K KKI
Sbjct:    3 EIPQARFAYDLSPMSVHIRNKGRRWYEFVTSICAIIGGTFTVMGLLSGFLSVLLKSKKI 61          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A7S4KAX2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAX2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.050e-18
Identity = 33/58 (56.90%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    3 VPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            VPEA+FS+DLSPM+VH+    RKWYD++TS+ AI+GG FT +G++D +L++V K KK+
Sbjct:   92 VPEARFSYDLSPMTVHVSTEGRKWYDYITSLCAIIGGAFTTLGLIDAVLYKVFKPKKL 149          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: F0YJN8_AURAN (Thioredoxin domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN8_AURAN)

HSP 1 Score: 84.3 bits (207), Expect = 5.650e-18
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    3 VPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKK 59
            VPEAKFS+DLSPM+V +  + R+WYDF+TSV AI+GGTFTVVG++D +L+++IK  K
Sbjct:  266 VPEAKFSYDLSPMAVLVSSKGRRWYDFVTSVCAIIGGTFTVVGIVDAVLYKIIKGGK 322          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A1E7FXM7_9STRA (DUF1692-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXM7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.650e-18
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    1 SQVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            S VPEA+FS+DLSPMSV + +  RKWYD+LTS+ AI+GGTFT +G++D +L++V K KK+
Sbjct:  409 SNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYKVFKPKKL 468          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A7S1VFQ8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFQ8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.850e-18
Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    1 SQVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            + VPEA+FS+DLSPMSV +++  RKWYD+LTS+ AI+GGTFT +G++D  L++V K KK+
Sbjct:  180 TNVPEARFSYDLSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYKVFKPKKL 239          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A7S2A3W5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3W5_TRICV)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-17
Identity = 32/58 (55.17%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    3 VPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            VPEA+FS+DLSPM+V +    R+WYD+LTS+ AIVGG +T +G++D +LF+++K KK+
Sbjct:   48 VPEARFSYDLSPMTVTLTSEGRRWYDYLTSLCAIVGGAYTTLGLIDAVLFKMLKPKKL 105          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A448Z7R2_9STRA (Thioredoxin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7R2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.760e-17
Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    1 SQVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKKI 60
            + VPEA+FS+DLSPMSV + +  RKWYD+LTS+ AI+GGTFT +G++D +L++V K KK+
Sbjct:  423 TNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYKVFKPKKL 482          
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Match: A0A7S0APZ6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0APZ6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.820e-17
Identity = 32/57 (56.14%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    3 VPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNILFRVIKQKK 59
            VPEA+FS+DLSPMSV + +R R+WY++LTS+ AI+GGT+T +G++D  L+RV + +K
Sbjct:  108 VPEARFSYDLSPMSVSVEKRARRWYEYLTSLCAIIGGTYTTLGLIDAALYRVFRSRK 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71469.14808.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE9_ECTSI9.470e-3094.92Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A835YQ98_9STRA9.190e-2482.14Endoplasmic reticulum-golgi intermediate compartme... [more]
A0A482S815_9ARCH7.380e-2057.63COPIIcoated_ERV domain-containing protein (Fragmen... [more]
A0A7S4KAX2_9STRA1.050e-1856.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0YJN8_AURAN5.650e-1863.16Thioredoxin domain-containing protein n=1 Tax=Aure... [more]
A0A1E7FXM7_9STRA6.650e-1860.00DUF1692-domain-containing protein n=1 Tax=Fragilar... [more]
A0A7S1VFQ8_9STRA6.850e-1858.33Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2A3W5_TRICV1.590e-1755.17Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A448Z7R2_9STRA1.760e-1758.33Thioredoxin domain-containing protein n=1 Tax=Pseu... [more]
A0A7S0APZ6_9STRA1.820e-1756.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012936Endoplasmic reticulum vesicle transporter, C-terminalPFAMPF07970COPIIcoated_ERVcoord: 3..48
e-value: 1.2E-11
score: 44.9
NoneNo IPR availablePANTHERPTHR10984ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEINcoord: 2..56
NoneNo IPR availablePANTHERPTHR10984:SF37PROTEIN DISULFIDE-ISOMERASE 5-3coord: 2..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..52
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71469contigH-elongata_contig71469:423..605 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71469.14808.1mRNA_H-elongata_contig71469.14808.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71469 423..605 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71469.14808.1 ID=prot_H-elongata_contig71469.14808.1|Name=mRNA_H-elongata_contig71469.14808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
SQVPEAKFSFDLSPMSVHIRQRRRKWYDFLTSVLAIVGGTFTVVGVLDNI
LFRVIKQKKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012936Erv_C