prot_H-elongata_contig71423.14804.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig71423.14804.1
Unique Name	prot_H-elongata_contig71423.14804.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	215

Homology

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BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5JL11_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL11_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.690e-41
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query:   52 SLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADFGV--PRG-FRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            S + +N FH S  H +  + + TA Q G+QLV EL PC GC +AK  RAP P    +RAA P   VHID   P+ E+  GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD     P G FR DN  E+T++AF+ +C+  GIRRE TAP TP+QN  VE
Sbjct:   47 STIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGM--RAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVE 211

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.300e-40
Identity = 83/163 (50.92%), Postives = 104/163 (63.80%), Query Frame = 0

Query:   56 MNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADF---GVPRGFRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            +N FH S  H +  + + TA Q G++LV EL PC GC +AK  RAP P   T RAA P   VHID   PF E++ GSRY+IMFVD+AS +QR YG   ++ S  L   KRF+AD    G P  FR DNG E+T +AFI++C+  GIRRE TAP TP+QN   E
Sbjct:   52 INLFHASTGHVNEFLMRETAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGT-RAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRAYGM--RAKSDTLKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAE 211

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BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5KQG9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.320e-40
Identity = 81/163 (49.69%), Postives = 102/163 (62.58%), Query Frame = 0

Query:   56 MNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADF---GVPRGFRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            +N FH S  H    + + TA Q G++LV E+ PC GC +AK  RAP P   T RAA P   +HID   PF ++L GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD    G P  FR DNG E+T SAF  +C+  GIRRE TAP TP+QN  VE
Sbjct:   94 INLFHASTGHVIEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGT-RAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGM--RAKSDTLKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFSSFCDAAGIRREYTAPDTPKQNAVVE 253

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5KCG3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.040e-40
Identity = 80/167 (47.90%), Postives = 104/167 (62.28%), Query Frame = 0

Query:   52 SLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADFGV--PRG-FRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            S + +N FH S  H +  + + TA Q G+QLV EL PC GC +AK  RAP P    +RAA P   VHID   P+ E+  GSRY+IMFVD+AS +QR  G   ++ S  L   +RF+AD     P G FR DN  E+T++AF+ +C+  GIRRE TAP TP+QN  VE
Sbjct:   47 STIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRANGM--RAKSYTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVE 211

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5JKD9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD9_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.110e-40
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query:   52 SLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADFGV--PRG-FRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            S + +N FH S  H +  + + TA Q G+QLV EL PC GC +AK  RAP P    +RAA P   VHID   P+ E+  GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD     P G FR DN  E+T++AF+ +C+  GIRRE TAP TP+QN  VE
Sbjct:  357 STIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGM--RAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVE 521

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BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.070e-40
Identity = 83/163 (50.92%), Postives = 104/163 (63.80%), Query Frame = 0

Query:   56 MNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADF---GVPRGFRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            +N FH S  H +  + + TA Q G++LV EL PC GC +AK  RAP P   T RAA P   VHID   PF E++ GSRY+IMFVD+AS +QR YG   ++ S  L   KRF+AD    G P  FR DNG E+T +AFI++C+  GIRRE TAP TP+QN   E
Sbjct: 1023 INLFHASTGHVNEFLMRETAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGT-RAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRGYGM--RAKSDTLKYVKRFLADMNGMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPDTPKQNAVAE 1182

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.300e-39
Identity = 81/163 (49.69%), Postives = 103/163 (63.19%), Query Frame = 0

Query:   56 MNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADF---GVPRGFRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            +N FH S  H +  + + TA Q G++LV E+ PC GC +AK  RAP P   T RAA P   +HID   PF ++L GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD    G P  FR DNG E+T SAF  +C+  GIRRE TAP TP+QN  VE
Sbjct:   94 INLFHASTGHVNEFLMRETAKQQGVRLVGEMQPCVGCVEAKGRRAPVPRRGT-RAAVPFGKIHIDLTGPFSDALDGSRYLIMFVDSASRWQRGYGM--RAKSDTLKFVQRFLADMNGMGTPGCFRMDNGGEFTGSAFTSFCDAAGIRREYTAPDTPKQNAVVE 253

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5KBJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.470e-39
Identity = 77/147 (52.38%), Postives = 96/147 (65.31%), Query Frame = 0

Query:   72 KATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADF---GVPRGFRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            + TA Q G++LV EL PC GC +AK  RAP P   T RAA P   VHID   PF E++ GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD    G P  FR DNG E+T +AFI++C+  GIRRE TAP TP+QN   E
Sbjct:    2 RETAKQQGVRLVGELQPCVGCVEAKGRRAPVPRRGT-RAAVPFGKVHIDLTGPFTEAMDGSRYLIMFVDSASRWQRAYGM--RAKSDTLKYVQRFLADMNNMGTPGCFRMDNGGEFTGAAFIEFCDAAGIRREYTAPNTPKQNAVAE 145

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5K690_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K690_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.890e-39
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query:   52 SLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADFGV--PRG-FRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            S + +N FH S  H +  + + TA Q G+QLV EL PC GC +AK  RAP P    +RAA P   VHID   P+ E+  GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD     P G FR DN  E+T++AF+ +C+  GIRRE TAP TP+QN  VE
Sbjct:  244 STIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGM--RAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVE 408

[Close]

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Match: A0A6H5J9R8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R8_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.450e-39
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query:   52 SLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRAPTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYGAWDKSASSILDLGKRFVADFGV--PRG-FRTDNGAEYTNSAFIDYCNGLGIRRELTAPYTPQQNGPVE 215
            S + +N FH S  H +  + + TA Q G+QLV EL PC GC +AK  RAP P    +RAA P   VHID   P+ E+  GSRY+IMFVD+AS +QR YG   ++ S  L   +RF+AD     P G FR DN  E+T++AF+ +C+  GIRRE TAP TP+QN  VE
Sbjct:  100 STIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEAKGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRWQRAYGM--RAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVE 264

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot

BLAST of mRNA_H-elongata_contig71423.14804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JL11_9PHAE	2.690e-41	48.50	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JD95_9PHAE	1.300e-40	50.92	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KQG9_9PHAE	1.320e-40	49.69	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KCG3_9PHAE	2.040e-40	47.90	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JKD9_9PHAE	7.110e-40	48.50	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5K3I1_9PHAE	8.070e-40	50.92	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5JS38_9PHAE	2.300e-39	49.69	Integrase catalytic domain-containing protein n=4 ...	[more]
A0A6H5KBJ8_9PHAE	2.470e-39	52.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K690_9PHAE	2.890e-39	48.50	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5J9R8_9PHAE	3.450e-39	48.50	Integrase catalytic domain-containing protein n=1 ...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 112..215 e-value: 5.0E-18 score: 65.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 109..215 score: 20.203
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 103..215 e-value: 1.5E-24 score: 88.3
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 44..141
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 177..212
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 177..212
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 44..141
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 109..215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig71423	contig	H-elongata_contig71423:255..1217 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig71423.14804.1	mRNA_H-elongata_contig71423.14804.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig71423 255..1217 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig71423.14804.1 ID=prot_H-elongata_contig71423.14804.1|Name=mRNA_H-elongata_contig71423.14804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
HSRTDNPVTLHDVLFVPGLGFNLFSFHVVQEKHDVTLNRLGAHLLGDRLV
FSLVYMNHFHVSLAHAHSSVSKATALQHGIQLVRELAPCSGCSKAKKIRA
PTPHHTTSRAAAPMDMVHIDTAEPFQESLGGSRYVIMFVDNASHYQRPYG
AWDKSASSILDLGKRFVADFGVPRGFRTDNGAEYTNSAFIDYCNGLGIRR
ELTAPYTPQQNGPVE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf