prot_H-elongata_contig7116.14776.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7116.14776.1
Unique Nameprot_H-elongata_contig7116.14776.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length423
Homology
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 4.500e-66
Identity = 132/327 (40.37%), Postives = 176/327 (53.82%), Query Frame = 0
Query:   12 FPALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSFFDVPLGYAPTTMVAWLSGDDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDHWRFFNLRGKDDFTYEIAVKQC---------------------KENTASTAI-ASLCSESMCLDDVGDVAKFNLTLGRPGNDG---------------WVKKRVKMTFNPVAMKLKGTGNL-WCANDIAFNDFRLVDHSSLP--IVLSDEKEQYFYNVQMFDIKPLRNESSGGGTG---IEEYAWAIFFEVATAVL 294
            FPA A  + + L ++  +   +G+ + ++L FC G  + C  G  N YN   EL   GT + F++PL Y PT M   + G DAWC +E IWN  T+LLG GAR+YLDGD G +GCNYGVH  TG FYPC+  WRFFNL G DD+ YEI VK C                     +E++AST I ASLCSES C +  G+V   N+TL      G               W   R   TFNPVAM+L   G+L WCA ++AFN++ LV+  + P  + L    ++ F+NVQ   +    +    GG+    I+  AW +  EV TAVL
Sbjct:   41 FPATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVHFDTGWFYPCQSRWRFFNLPGSDDYEYEIKVKPCDSATPSGSASLSQQEEEAAAVRESSASTKILASLCSESECDETAGEVV--NVTLAAEPAQGXXXXXXXXXXXXXXDWATTRTPATFNPVAMRLTNVGDLPWCAEEVAFNEYTLVNRYASPHGMKLDVGDDRLFFNVQSLGLLAGDSSDDPGGSDDDYIKGEAWELAREVITAVL 365          
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 4.660e-65
Identity = 119/304 (39.14%), Postives = 162/304 (53.29%), Query Frame = 0
Query:   14 ALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSN-CTTGESNAYNLDGELKHPGTWSFFDVPLGYAPTTMVAWLSGDDAWCIEEVIWNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDHWRFFNLRGKDDFTYEIAVKQCKENTAS----------------------TAIASLCSESMCLDDVGDVAKFNLTL--------------GRPGNDG-WVKKRVKMTFNPVAMKLKGTGNL-WCANDIAFNDFRLVDHSSLP--IVLSDEKEQYFYNVQMFDIKPLRNESSGGGT 276
            A A  +   L ++ C++  +G+ + ++L FC G  + C  G  N YN   EL   GTW+ F++PL + PT M   + G DAWC +EVIWN  T+LLG G R+YLDGD G +GCNYGVH  TG FYPC+  WRFFNL+G DD+ YEI VK C   T+S                        +ASLCSES C + VG+V    L                 R G+ G W   R   TFNPVAM+L   G+  WCA ++AFN++ LV+  + P  + L    ++ F+NVQ   +    +    GG+
Sbjct:  127 ATAAIQPFTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVHFDTGWFYPCQSSWRFFNLQGSDDYEYEIKVKPCGSATSSGXXXXXXXXXXXXXXXXXXXSSRILASLCSESECDETVGEVVNVTLAAEPSHRHGXXXXXXTSRAGSGGDWATTRTPATFNPVAMRLTNVGDFPWCAEEVAFNEYTLVNRFASPHGMKLGVGDDRLFFNVQSLGLLAGASSDDPGGS 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7116.14776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1J9_ECTSI4.500e-6640.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K899_9PHAE4.660e-6539.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..280
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 306..422
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 281..305
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.831
NoneNo IPR availableTMHMMTMhelixcoord: 283..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7116contigH-elongata_contig7116:3902..7264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7116.14776.1mRNA_H-elongata_contig7116.14776.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7116 3781..7723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7116.14776.1 ID=prot_H-elongata_contig7116.14776.1|Name=mRNA_H-elongata_contig7116.14776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp
MFCVIVSVLLAFPALAKARSHNLRIKACSDIYSGTENTIYLKFCQGMSNC
TTGESNAYNLDGELKHPGTWSFFDVPLGYAPTTMVAWLSGDDAWCIEEVI
WNNSTSLLGRGARIYLDGDKGFRGCNYGVHHQTGRFYPCRDHWRFFNLRG
KDDFTYEIAVKQCKENTASTAIASLCSESMCLDDVGDVAKFNLTLGRPGN
DGWVKKRVKMTFNPVAMKLKGTGNLWCANDIAFNDFRLVDHSSLPIVLSD
EKEQYFYNVQMFDIKPLRNESSGGGTGIEEYAWAIFFEVATAVLTSLFLY
AGVILRQRVLSRRNKDGKRDGAHEPLCTECRERSAEVVSIEDGDKAGDQT
SNVLSDKPGLRLRKCGELQQEQHLPNLSQTYRHDGGTIPTGESENDEDDG
EPYHETLLNDIEAAGLGDKVAP*
back to top