prot_H-elongata_contig71099.14772.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71099.14772.1
Unique Nameprot_H-elongata_contig71099.14772.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length215
Homology
[Close]
BLAST of mRNA_H-elongata_contig71099.14772.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.870e-6
Identity = 50/127 (39.37%), Postives = 62/127 (48.82%), Query Frame = 0 
Query:   61 TSGKASSAVASA---------GVESVWRLLDALMKPTDDHEETAELLSVLGAPALADAVLDSEFALGG-AGGRVPGAPPHRDGGRGDENGIID--------------SSVRNRFPLTSAAVKRLRDL 163
            TSG AS++ A A         G  SVWRLLDA    ++ H E AELLSVLGAPALA AVL++E   G  + G++  A    D   G                     +  R RFPL +AAV+  R L
Sbjct:  279 TSGGASASTAKAAPRATPPTPGRSSVWRLLDAFSVASEAHGEKAELLSVLGAPALAVAVLEAEAVAGAKSAGKMAAAHGFGDAAGGGXXXXXXXXXXXXGRVGEEAHALARIRFPLATAAVEAFRRL 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71099.14772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB40_9PHAE4.870e-639.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71099contigH-elongata_contig71099:859..1503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71099.14772.1mRNA_H-elongata_contig71099.14772.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71099 859..1503 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71099.14772.1 ID=prot_H-elongata_contig71099.14772.1|Name=mRNA_H-elongata_contig71099.14772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
SSKSAVEARAAGWTGDREGRSLPLLRVIAVDFIVSLVRLEAASVVEHGEQ
QHATVGCRRSTSGKASSAVASAGVESVWRLLDALMKPTDDHEETAELLSV
LGAPALADAVLDSEFALGGAGGRVPGAPPHRDGGRGDENGIIDSSVRNRF
PLTSAAVKRLRDLSRLHLPSSSPRAPASARISEAVASGLVSYAAAAFRRC
SSYREGDSSSGDARG
back to top